INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PX630758	Salmonella phage EDA06	42372	50.038	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	98.880	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX630757	Salmonella phage EDA02	108845	39.128	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	96.040	AAI-based (high-confidence)	Tequintavirus	Tequintavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PX630756	Escherichia phage EcoFZ-93	38641	49.008	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli 93S	Complete	High-quality	100.000	DTR (high-confidence)	Berlinvirus	Berlinvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX630742	Acinetobacter phage AbT1	53410	39.262	Acinetobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Acinetobacter baumannii	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_63
PX630741	Xanthomonas phage XapPhi16	44850	63.014	Xanthomonas	Group I	Kantovirinae	Unclassified	Kantovirinae	Anamaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. pruni	High-quality	High-quality	96.910	AAI-based (high-confidence)	Xanthovirus	Xanthovirus neb7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX630740	Xanthomonas phage XapPhi17	45121	62.982	Xanthomonas	Group I	Kantovirinae	Unclassified	Kantovirinae	Anamaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. pruni	High-quality	High-quality	97.500	AAI-based (high-confidence)	Xanthovirus	Xanthovirus neb7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX630739	Xanthomonas phage XapPhi11	45101	62.974	Xanthomonas	Group I	Kantovirinae	Unclassified	Kantovirinae	Anamaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. pruni	High-quality	High-quality	97.450	AAI-based (high-confidence)	Xanthovirus	Xanthovirus neb7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX630738	Xanthomonas phage XapPhi12	45165	62.962	Xanthomonas	Group I	Kantovirinae	Unclassified	Kantovirinae	Anamaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. pruni	High-quality	High-quality	97.590	AAI-based (high-confidence)	Xanthovirus	Xanthovirus neb7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX630737	Xanthomonas phage XapPhi13	45142	62.964	Xanthomonas	Group I	Kantovirinae	Unclassified	Kantovirinae	Anamaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. pruni	High-quality	High-quality	97.550	AAI-based (high-confidence)	Xanthovirus	Xanthovirus neb7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX630736	Xanthomonas phage XapPhi14	45165	62.945	Xanthomonas	Group I	Kantovirinae	Unclassified	Kantovirinae	Anamaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. pruni	High-quality	High-quality	97.590	AAI-based (high-confidence)	Xanthovirus	Xanthovirus neb7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic