INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV915875 | Arthrobacter phage MiniMommy | 43680 | 66.827 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Arthrobacter sulfureus ATCC 19098 | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | Hilgardvirus | Hilgardvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915874 | Mycobacterium phage EGUnicorn | 42003 | 66.474 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.030 | AAI-based (high-confidence) | Charlievirus | Charlievirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_34;immunity orf_35 |
| PV915873 | Streptomyces phage Scheme | 134433 | 50.016 | Streptomyces | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Streptomyces lividans JI 1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | Samistivirus | Samistivirus peebs | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915872 | Mycobacterium phage Kolhan | 67387 | 68.964 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Rosebushvirus | Rosebushvirus rosebush | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915871 | Mycobacterium phage Lea83 | 61105 | 67.346 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.570 | AAI-based (high-confidence) | Keshuvirus | Keshuvirus shedlockholmes | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_41;immunity orf_44 |
| PV915870 | Arthrobacter phage Kinny | 56422 | 51.090 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Arthrobacter globiformis B-2979 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV915869 | Gordonia phage Talon44 | 60184 | 51.048 | Gordonia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Gordonia terrae 3612 | High-quality | High-quality | 97.070 | AAI-based (high-confidence) | Tanisvirus | Tanisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915868 | Mycobacterium phage Snickers | 50824 | 64.025 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Microwolfvirus | Microwolfvirus microwolf | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_69 |
| PV915867 | Curtobacterium phage Beaupre | 39983 | 70.910 | Curtobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Curtobacterium flaccumfaciens NRRL B-59340 | High-quality | High-quality | 90.300 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV915866 | Microbacterium phage HollowPurple | 63870 | 61.672 | Microbacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microbacterium foliorum NRRL B-24224 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |