INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV915865 | Arthrobacter phage ShakeItOph | 43672 | 66.752 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Arthrobacter sulfureus ATCC 19098 | High-quality | High-quality | 98.900 | AAI-based (high-confidence) | Hilgardvirus | Hilgardvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915864 | Arthrobacter phage Hillester | 52737 | 62.527 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Arthrobacter globiformis B-2979 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Richievirus | Richievirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36;integrase orf_40 |
| PV915863 | Mycobacterium phage Polyphemus | 50424 | 61.606 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 95.740 | AAI-based (high-confidence) | Gladiatorvirus | Gladiatorvirus jewelbug | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_32;antirepressor orf_65 |
| PV915862 | Microbacterium phage Statler | 62248 | 66.855 | Microbacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microbacterium foliorum NRRL B-24224 | Complete | High-quality | 100.000 | DTR (high-confidence) | Squashvirus | Squashvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915861 | Arthrobacter phage Issa | 57467 | 49.886 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 99.340 | AAI-based (high-confidence) | Gordonvirus | Gordonvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915860 | Mycobacterium phage PrinceCharming | 67429 | 68.932 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.790 | AAI-based (high-confidence) | Rosebushvirus | Rosebushvirus rosebush | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915859 | Arthrobacter phage Chlochlo | 57374 | 50.251 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Arthrobacter globiformis B-2979 | High-quality | High-quality | 99.340 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PV915858 | Mycobacterium phage Cheesepuff | 57052 | 61.426 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_44;antirepressor orf_51 |
| PV915857 | Microbacterium phage Annapurna | 56247 | 63.547 | Microbacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | Krampusvirus | Krampusvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915856 | Mycobacterium phage Kraw | 57806 | 67.908 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fionnbharthvirus | Fionnbharthvirus fionnbharth | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_43;immunity orf_45;cro orf_46 |