INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PX651400 | Salmonella phage vB_SEn_PH353 | 39931 | 49.914 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Enteritidis | Complete | High-quality | 100.000 | DTR (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX651399 | Salmonella phage vB_SEn_Bv0003 | 43161 | 49.950 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Enteritidis | Complete | High-quality | 100.000 | DTR (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX646973 | Limosilactobacillus phage LFP02 | 43789 | 46.064 | Limosilactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Limosilactobacillus fermentum | High-quality | High-quality | 96.360 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_42;cro orf_43;integrase orf_46;integrase orf_50 |
| PX646905 | Limosilactobacillus phage LFP03 | 39556 | 46.084 | Limosilactobacillus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Limosilactobacillus fermentum | High-quality | High-quality | 92.840 | AAI-based (high-confidence) | Lacfervirus | Lacfervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX645697 | Escherichia phage vB_EcoP_ZCEC16 | 77362 | 42.105 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kuravirus | Kuravirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX645604 | Salmonella phage GRNsp01 | 41802 | 49.632 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Gallinarum GXC180701 | High-quality | High-quality | 97.640 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus SHWT1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX645529 | Salmonella phage GRNsp09 | 163270 | 35.669 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Enteritidis JSC160603 | High-quality | High-quality | 96.930 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX641096 | Klebsiella phage vB_kpnP_ZB27 | 50486 | 50.608 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae Kp202 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Webervirus | Webervirus 1086 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX630760 | Salmonella phage EDA03 | 42770 | 49.888 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 99.690 | AAI-based (medium-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX630759 | Salmonella phage EDA05 | 40219 | 48.221 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |