INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV915885 | Streptomyces phage Westy | 130324 | 46.945 | Streptomyces | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Streptomyces sanglieri UNT16F27A | Complete | High-quality | 100.000 | DTR (high-confidence) | Gilsonvirus | Gilsonvirus comrade | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915884 | Streptomyces phage Garnacho | 114833 | 52.106 | Streptomyces | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Streptomyces lividans JI 1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV915883 | Streptomyces phage Cadmus | 133197 | 49.400 | Streptomyces | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Streptomyces lividans JI 1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | Samistivirus | Samistivirus daubenski | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915882 | Gordonia phage Gustavo | 58305 | 68.210 | Gordonia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Gordonia terrae NRRL B-16283 | High-quality | High-quality | 99.220 | AAI-based (high-confidence) | Kroosvirus | Kroosvirus tangerine | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV915881 | Gordonia phage Gusicorn | 60438 | 51.952 | Gordonia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | Kenoshavirus | Kenoshavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915880 | Gordonia phage Kwobi | 58482 | 68.127 | Gordonia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Gordonia terrae 3612 | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | Kroosvirus | Kroosvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV915879 | Gordonia phage NoPickles | 59701 | 51.334 | Gordonia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | Tanisvirus | Tanisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV915878 | Mycobacterium phage November | 61517 | 67.287 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Amginevirus | Amginevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_37;immunity orf_40;cro orf_41 |
| PV915877 | Mycobacterium phage Bern | 58365 | 66.727 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 95.340 | AAI-based (high-confidence) | Anayavirus | Anayavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV915876 | Gordonia phage CathyBurgh | 75886 | 58.954 | Gordonia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Montyvirus | Montyvirus flakey | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |