INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
PX682312	Xanthomonas phage vB_Xoo_GX2	44139	52.249	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae GX2-3	High-quality	High-quality	99.790	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682311	Xanthomonas phage vB_Xoo_GX1	43916	52.197	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae GXB1-2	High-quality	High-quality	99.310	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682310	Xanthomonas phage vB_Xoo_GDJ1	44681	52.087	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682309	Xanthomonas phage vB_Xoo_GDJ2	44555	52.021	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682308	Xanthomonas phage vB_Xoo_FJ1	44507	52.293	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682307	Xanthomonas phage vB_Xoo_CZ2	46168	51.997	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682306	Xanthomonas phage vB_Xoo_CZ1	46142	52.005	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682305	Xanthomonas phage vB_Xoo_AQ1	42448	52.344	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	95.970	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682304	Xanthomonas phage vB_Xoo_QZ532	44733	52.196	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682303	Xanthomonas phage vB_Xoo_QZ143	45818	51.934	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic