Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PX682302Xanthomonas phage vB_Xoo_NBW4486252.318XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682301Xanthomonas phage vB_Xoo_JL1LN4250651.884XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzae LN4High-qualityHigh-quality96.120AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682300Xanthomonas phage vB_Xoo_JH14381352.343XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality99.060AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682299Xanthomonas phage vB_Xoo_GDJ34335351.727XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality98.040AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682280Aeromonas phage DT65P15254952.340AeromonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Aeromonas dhakensis A4.4THigh-qualityHigh-quality99.830AAI-based (high-confidence) PhayathaivirusPhayathaivirus pAh62TGThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PX682279Aeromonas phage AG89P44287452.398AeromonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Aeromonas dhakensis A24.1Medium-qualityGenome-fragment81.630AAI-based (high-confidence) PhayathaivirusPhayathaivirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PX682278Edwardsiella phage FAG29P14399947.137EdwardsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Edwardsiella tarda E24.1High-qualityHigh-quality97.200AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PX682277Edwardsiella phage CT68P13914250.544EdwardsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Edwardsiella ictaluri E1High-qualityHigh-quality97.910AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX682272Nitrosomonas phage vB_NeuP-Nir14121244.941NitrosomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Nitrosomonas europaea DSM 28437 (=Nm50)CompleteHigh-quality100.000DTR (high-confidence) CatalonvirusCatalonvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX680748Stenotrophomonas phage vB_Sma_QH1677587454.805StenotrophomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Stenotrophomonas maltophilia 902High-qualityHigh-quality99.930AAI-based (high-confidence) PokkenvirusPokkenvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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