INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PX682302 | Xanthomonas phage vB_Xoo_NBW | 44862 | 52.318 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas oryzae pv. oryzae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Xipdecavirus | Xipdecavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX682301 | Xanthomonas phage vB_Xoo_JL1LN | 42506 | 51.884 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas oryzae pv. oryzae LN4 | High-quality | High-quality | 96.120 | AAI-based (high-confidence) | Xipdecavirus | Xipdecavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX682300 | Xanthomonas phage vB_Xoo_JH1 | 43813 | 52.343 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas oryzae pv. oryzae | High-quality | High-quality | 99.060 | AAI-based (high-confidence) | Xipdecavirus | Xipdecavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX682299 | Xanthomonas phage vB_Xoo_GDJ3 | 43353 | 51.727 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas oryzae pv. oryzae | High-quality | High-quality | 98.040 | AAI-based (high-confidence) | Xipdecavirus | Xipdecavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX682280 | Aeromonas phage DT65P1 | 52549 | 52.340 | Aeromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Aeromonas dhakensis A4.4T | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | Phayathaivirus | Phayathaivirus pAh62TG | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PX682279 | Aeromonas phage AG89P4 | 42874 | 52.398 | Aeromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Aeromonas dhakensis A24.1 | Medium-quality | Genome-fragment | 81.630 | AAI-based (high-confidence) | Phayathaivirus | Phayathaivirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PX682278 | Edwardsiella phage FAG29P1 | 43999 | 47.137 | Edwardsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Edwardsiella tarda E24.1 | High-quality | High-quality | 97.200 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PX682277 | Edwardsiella phage CT68P1 | 39142 | 50.544 | Edwardsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Edwardsiella ictaluri E1 | High-quality | High-quality | 97.910 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX682272 | Nitrosomonas phage vB_NeuP-Nir1 | 41212 | 44.941 | Nitrosomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Nitrosomonas europaea DSM 28437 (=Nm50) | Complete | High-quality | 100.000 | DTR (high-confidence) | Catalonvirus | Catalonvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX680748 | Stenotrophomonas phage vB_Sma_QH167 | 75874 | 54.805 | Stenotrophomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Stenotrophomonas maltophilia 902 | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | Pokkenvirus | Pokkenvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |