INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
PX682322	Xanthomonas phage vB_Xoo_QZ531	44718	52.138	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682321	Xanthomonas phage vB_Xoo_NB1	43218	52.453	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	97.720	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682320	Xanthomonas phage vB_Xoo_JLP5	44811	51.804	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682319	Xanthomonas phage vB_Xoo_JLP4	46120	51.416	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682318	Xanthomonas phage vB_Xoo_JLH1	45721	52.055	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682317	Xanthomonas phage vB_Xoo_JLGD	44555	52.017	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682316	Xanthomonas phage vB_Xoo_JL5LN	44811	51.804	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae LN4	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682315	Xanthomonas phage vB_Xoo_JL4LN	46119	51.417	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae LN4	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682314	Xanthomonas phage vB_Xoo_GXN	43967	52.198	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae GXB1-2	High-quality	High-quality	99.400	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX682313	Xanthomonas phage vB_Xoo_GX3	44381	52.209	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic