INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ON108643 | Mycobacterium phage Leopard | 71575 | 58.765 | Mycobacterium | Group I | Onyinyevirus | Onyinyevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Onyinyevirus | Onyinyevirus onyinye | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON108642 | Microbacterium phage Anseraureola | 17425 | 68.666 | Microbacterium | Group I | Paopuvirus | Paopuvirus | Pelczarvirinae | Orlajensenviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Paopuvirus | Paopuvirus azizam | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON108641 | Microbacterium phage RobinRose | 63011 | 66.991 | Microbacterium | Group I | Gillianvirus | Gillianvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | Complete | High-quality | 100.000 | DTR (high-confidence) | Gillianvirus | Gillianvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON108640 | Mycobacterium phage Sham4 | 51338 | 63.771 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.270 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | parA orf_30;immunity orf_68 |
| ON107264 | Bacillus phage BUCT083 | 133818 | 34.933 | Bacillus | Group I | Spbetavirus | Spbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis subsp. subtilis str. 168 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_31;integrase orf_161 |
| ON107243 | Klebsiella phage 37P2 | 39104 | 55.051 | Klebsiella | Group I | Guernseyvirinae | Unclassified | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae TCU_KP_37 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON087563 | Serratia phage vB_SmaM-Otaku | 39857 | 57.413 | Serratia | Group I | Otakuvirus | Otakuvirus | Unclassified | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens LVF3 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Otakuvirus | Otakuvirus otaku | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON086985 | Enterococcus phage 47 | 57289 | 39.968 | Enterococcus | Group I | Saphexavirus | Saphexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis EnGen0243 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Saphexavirus | Saphexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON086804 | Escherichia phage ZCEC13 | 48021 | 48.874 | Escherichia | Group I | Zewailvirus | Zewailvirus | Jameshumphriesvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Zewailvirus | Zewailvirus ZCEC13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| ON081336 | Streptomyces phage Annihilus | 43562 | 61.182 | Streptomyces | Group I | Scapunavirus | Scapunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces scabiei RL-34 | High-quality | High-quality | 97.180 | AAI-based (high-confidence) | Scapunavirus | Scapunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |