INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
ON113167	Enterococcus phage vB_OCPT_Carl	143879	35.867	Enterococcus	Group I	Kochikohdavirus	Kochikohdavirus	Brockvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kochikohdavirus	Kochikohdavirus car	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON109291	Pseudomonas phage PCS5	39340	58.002	Pseudomonas	Group I	Pifdecavirus	Pifdecavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas putida NBRC 14164	High-quality	High-quality	97.500	AAI-based (high-confidence)	Unosvirus	Unosvirus PCS4	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
ON108651	Gordonia phage Wrigley	51878	66.294	Gordonia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	99.480	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_40;antirepressor orf_49
ON108650	Streptomyces phage Squillium	132303	50.204	Streptomyces	Group I	Samistivirus	Samistivirus	Boydwoodruffvirinae	Stanwilliamsviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces lividans JI 1326	Complete	High-quality	100.000	DTR (high-confidence)	Samistivirus	Samistivirus nootnoot	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON108649	Mycobacterium phage Labelle	69709	50.354	Mycobacterium	Group I	Patiencevirus	Patiencevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.870	AAI-based (high-confidence)	Patiencevirus	Patiencevirus patience	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_14
ON108648	Microbacterium phage Yasuo	17433	68.674	Microbacterium	Group I	Paopuvirus	Paopuvirus	Pelczarvirinae	Orlajensenviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Paopuvirus	Paopuvirus Scamander	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON108647	Streptomyces phage Vrykolakas	46174	60.673	Streptomyces	Group I	Flowerpowervirus	Flowerpowervirus	Beephvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces scabiei RL-34	Complete	High-quality	100.000	DTR (high-confidence)	Flowerpowervirus	Flowerpowervirus flowerpower	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON108646	Streptomyces phage TonyStarch	55469	59.604	Streptomyces	Group I	Rimavirus	Rimavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces mirabilis NRRL B-2400	High-quality	High-quality	99.100	AAI-based (high-confidence)	Rimavirus	Rimavirus rima	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON108645	Mycobacterium phage NoShow	52825	60.466	Mycobacterium	Group I	Merionvirus	Merionvirus	Alphabravovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Merionvirus	Merionvirus boshow	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON108644	Gordonia phage CaiB	61620	68.637	Gordonia	Group I	Mossrosevirus	Mossrosevirus	Durvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia rubripertincta NRRL B-16540	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mossrosevirus	Mossrosevirus caib	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic