INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP494865 | Paenibacillus phage LunBun | 44421 | 42.973 | Paenibacillus | Group I | Gochnauervirinae | Unclassified | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae F1A | Medium-quality | Genome-fragment | 76.410 | HMM-based (lower-bound) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_30;antirepressor orf_34 |
| OP494211 | Salmonella phage vB-SeS-01 | 43114 | 49.638 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Sendai | Complete | High-quality | 100.000 | DTR (high-confidence) | Jerseyvirus | Jerseyvirus S532 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP493558 | Staphylococcus phage phiSa2-NARSA676 | 41838 | 33.085 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus NARSA676 ST59-MRSA-IVa | High-quality | High-quality | 98.490 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;cro orf_8;antirepressor orf_13 |
| OP493557 | Staphylococcus phage phiSa2-NARSA483 | 42927 | 33.434 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus NARSA483 ST59-MRSA-IVa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;cro orf_8;antirepressor orf_13 |
| OP491959 | Cutibacterium phage PAP1-1 | 29534 | 54.029 | Cutibacterium | Group I | Pahexavirus | Pahexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cutibacterium acnes subsp. acnes | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pahexavirus | Pahexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP491958 | Trabzonvirus APT65 | 85188 | 39.409 | Unspecified | Group I | Aquaneticvirus | Aquaneticvirus | Unclassified | Grimontviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | High-quality | High-quality | 92.890 | AAI-based (high-confidence) | Aquaneticvirus | Aquaneticvirus ApT65 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP490597 | Serratia phage SMP | 68405 | 49.189 | Serratia | Group I | Myosmarvirus | Myosmarvirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Myosmarvirus | Myosmarvirus SMP | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP490271 | Mycobacterium phage Ritam007 | 55105 | 61.368 | Mycobacterium | Group I | Gracegardnervirinae | Unclassified | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc^2 155 | High-quality | High-quality | 97.980 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_44;cro orf_47;antirepressor orf_48 |
| OP485124 | Pseudomonas phage PSV6 | 40070 | 57.956 | Pseudomonas | Group I | Pifdecavirus | Pifdecavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae | Complete | High-quality | 100.000 | DTR (high-confidence) | Unosvirus | Unosvirus UNOSLW1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OP484858 | Sinorhizobium phage NV1.1.1 | 64155 | 59.400 | Sinorhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium meliloti | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |