INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OQ383618 | Salmonella phage MET_P1_103_31 | 31582 | 52.144 | Salmonella | Group I | Peduovirus | Peduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.870 | AAI-based (high-confidence) | Peduovirus | Peduovirus P110331 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_5;integrase orf_13 |
| OQ383328 | Mycobacterium phage Nix22 | 44895 | 67.359 | Mycobacterium | Group I | Fishburnevirus | Fishburnevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc2 155 | High-quality | High-quality | 91.610 | AAI-based (high-confidence) | Fishburnevirus | Fishburnevirus arib1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;immunity orf_30;antirepressor orf_33 |
| OQ383327 | Mycobacterium phage LOCARD | 53506 | 61.488 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc2 155 | High-quality | High-quality | 92.970 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_36;integrase orf_38;cro orf_41 |
| OQ383326 | Mycobacterium phage LOCV5 | 44450 | 67.327 | Mycobacterium | Group I | Fishburnevirus | Fishburnevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc2 155 | High-quality | High-quality | 90.700 | AAI-based (high-confidence) | Fishburnevirus | Fishburnevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_30;immunity orf_31;antirepressor orf_34 |
| OQ383325 | Mycobacterium phage LOCV4 | 42402 | 67.240 | Mycobacterium | Group I | Fishburnevirus | Fishburnevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc2 155 | Medium-quality | Genome-fragment | 86.530 | AAI-based (high-confidence) | Fishburnevirus | Fishburnevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;immunity orf_30;antirepressor orf_33 |
| OQ383324 | Mycobacterium phage LOCV3 | 44951 | 67.313 | Mycobacterium | Group I | Fishburnevirus | Fishburnevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc2 155 | High-quality | High-quality | 91.720 | AAI-based (high-confidence) | Fishburnevirus | Fishburnevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_30;immunity orf_31;antirepressor orf_34 |
| OQ383323 | Mycobacterium phage LOCV2 | 43944 | 67.256 | Mycobacterium | Group I | Fishburnevirus | Fishburnevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | Medium-quality | Genome-fragment | 89.650 | AAI-based (high-confidence) | Fishburnevirus | Fishburnevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_29;antirepressor orf_32 |
| OQ383322 | Mycobacterium phage LOCV1 | 44885 | 67.285 | Mycobacterium | Group I | Fishburnevirus | Fishburnevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc2 155 | High-quality | High-quality | 91.590 | AAI-based (high-confidence) | Fishburnevirus | Fishburnevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_30;immunity orf_31;antirepressor orf_34 |
| OQ383211 | Pseudomonas phage UF_RH6 | 94715 | 55.329 | Pseudomonas | Group I | Samunavirus | Samunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Samunavirus | Samunavirus SM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_110 |
| OQ378934 | Escherichia phage LH2 | 167259 | 35.486 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli GXXWH2 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |