INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OQ378339	Pseudomonas phage phiPA1-3	73402	54.696	Pseudomonas	Group I	Litunavirus	Litunavirus	Migulavirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PA001	Complete	High-quality	100.000	ITR (high-confidence)	Litunavirus	Litunavirus Pa13	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ378314	Acinetobacter phage F70-K44	41041	39.261	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii NIPH 70 K44 strain	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus F70K44	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ376858	Paracoccus phage ParMal1	44565	57.583	Paracoccus	Group I	Mallvirus	Mallvirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paracoccus sp.	Complete	High-quality	100.000	DTR (high-confidence)	Mallvirus	Mallvirus ParMal1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ376857	Paracoccus phage ParKuw1	44509	60.761	Paracoccus	Group I	Kuwvirus	Kuwvirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paracoccus sp.	Complete	High-quality	100.000	DTR (high-confidence)	Kuwvirus	Kuwvirus ParKuw1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ376695	Escherichia phage YP-6	139323	43.612	Escherichia	Group I	Vequintavirus	Vequintavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	Complete	High-quality	100.000	DTR (high-confidence)	Vequintavirus	Vequintavirus YP6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ363659	Pseudomonas phage D6	307402	48.431	Pseudomonas	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. tomato str. DC3000	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_44
OQ362005	Salmonella phage GSW6	112942	40.179	Salmonella	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Infantis	High-quality	High-quality	99.930	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus GSW6	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OQ361773	Cronobacter phage vB_Cdu_VP8	166625	41.889	Cronobacter	Group I	Muldoonvirus	Muldoonvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cronobacter dublinensis NCTC 9844	High-quality	High-quality	99.390	AAI-based (high-confidence)	Muldoonvirus	Muldoonvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ359892	Salmonella phage vB_SenP_UTK0002	70977	39.702	Salmonella	Group I	Ithacavirus	Ithacavirus	Humphriesvirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Stanley str. FSL S5-0464	High-quality	High-quality	99.700	AAI-based (high-confidence)	Ithacavirus	Ithacavirus Utk0002	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ359891	Salmonella phage vB_SenP_UTK0001	71436	39.778	Salmonella	Group I	Ithacavirus	Ithacavirus	Humphriesvirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Anatum str. FSL A4-0525	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ithacavirus	Ithacavirus Utk0001	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic