INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF999224	Lactobacillus phage LJ	44260	44.781	Lactobacillus	Group I	Junavirus	Junavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus casei W56	High-quality	High-quality	100.000	AAI-based (high-confidence)	Junavirus	Junavirus LJ	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_54;integrase orf_60;antirepressor orf_64
MG000860	Bacillus phage BSP9	155958	42.008	Bacillus	Group I	Nitunavirus	Nitunavirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus subtilis ATCC 15245	High-quality	High-quality	98.540	AAI-based (high-confidence)	Nitunavirus	Nitunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG004687	Escherichia phage mutPK1A2	44784	45.067	Escherichia	Group I	Vectrevirus	Vectrevirus	Molineuxvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K1 strain EH954	Complete	High-quality	100.000	DTR (high-confidence)	Vectrevirus	Vectrevirus mutPK1A2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG009575	Mycobacterium phage Kumao	70373	62.072	Mycobacterium	Group I	Kumaovirus	Kumaovirus	Unclassified	Vilmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kumaovirus	Kumaovirus kumao	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_90
MG018224	Stenotrophomonas phage DLP4	63945	65.059	Stenotrophomonas	Group I	Bosavirus	Bosavirus	Bradleyvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia D1585	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bosavirus	Bosavirus bosa	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_56
MG018926	Pseudomonas phage tabernarius	67498	52.296	Pseudomonas	Group I	Tabernariusvirus	Tabernariusvirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. avii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tabernariusvirus	Tabernariusvirus tabernarius	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG018927	Pseudomonas phage nickie	112225	57.360	Pseudomonas	Group I	Nickievirus	Nickievirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. avii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Nickievirus	Nickievirus nickie	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG018928	Pseudomonas phage inbricus	70211	55.856	Pseudomonas	Group I	Inbricusvirus	Inbricusvirus	Rothmandenesvirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. avii	High-quality	High-quality	97.400	AAI-based (high-confidence)	Inbricusvirus	Inbricusvirus inbricus	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG018929	Pseudomonas phage uligo	47868	56.301	Pseudomonas	Group I	Uliginvirus	Uliginvirus	Colwellvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. avii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Uliginvirus	Uliginvirus uligo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG018930	Pseudomonas phage ventosus	97425	48.987	Pseudomonas	Group I	Ventosusvirus	Ventosusvirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. avii	Complete	High-quality	100.000	DTR (high-confidence)	Ventosusvirus	Ventosusvirus ventosus	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic