INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG020111 | Lactobacillus phage Lb | 43416 | 41.738 | Lactobacillus | Group I | Heilongjiangvirus | Heilongjiangvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus brevis ATCC 367 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Heilongjiangvirus | Heilongjiangvirus Lb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_50;parA orf_57 |
| MG022439 | Phage 203 | 138073 | 43.702 | Unspecified | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG022440 | Phage 206 | 138073 | 43.702 | Unspecified | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG025518 | Gokushovirus MK-2017 | 4907 | 41.329 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 98.120 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MG029509 | Staphylococcus phage phiSa2wa_st5 | 44823 | 33.407 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 18790 genotype ST5-MRSA-IVa (2B) | High-quality | High-quality | 96.300 | AAI-based (high-confidence) | Triavirus | Triavirus st5 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_6;antirepressor orf_8;integrase orf_42 |
| MG029510 | Staphylococcus phage phiSa2wa_st22 | 38576 | 33.241 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 16386 genotype ST22-MRSA-IVc (2B) | High-quality | High-quality | 91.380 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus st22 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_5;cro orf_6;antirepressor orf_7 |
| MG029511 | Staphylococcus phage phiSa2wa_st30 | 45780 | 33.438 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 16663 genotype ST30-MRSA-IVc (2B) | High-quality | High-quality | 98.490 | AAI-based (high-confidence) | Triavirus | Triavirus st30 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_6;antirepressor orf_8;integrase orf_28 |
| MG029512 | Staphylococcus phage phiSa2wa_st59 | 42133 | 33.276 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 16672 genotype ST59-MRSA-IVa (2B) | High-quality | High-quality | 99.720 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus phi7247PVL | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;antirepressor orf_14 |
| MG029513 | Staphylococcus phage phiSa2wa_st72 | 47213 | 33.137 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 15803 genotype ST72-MRSA-IVa (2B) | Complete | High-quality | 100.000 | DTR (high-confidence) | Triavirus | Triavirus P240 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_36 |
| MG029514 | Staphylococcus phage phiSa2wa_st78 | 45878 | 33.216 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus RNSH95 genotype ST78-MRSA-IVa (2B) | Complete | High-quality | 100.000 | DTR (high-confidence) | Triavirus | Triavirus st78 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_33 |