INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MF975720 | Pseudomonas phage VW-6S | 37917 | 56.901 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sivasensis W-6 | Complete | High-quality | 100.000 | DTR (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_7;cro orf_14;cro orf_15;integrase orf_17;integrase orf_21 |
| MF975721 | Pseudomonas phage VW-6B | 35306 | 56.755 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens W-6 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MF979559 | Ralstonia phage DU_RP_I | 40657 | 58.789 | Ralstonia | Group I | Gyeongsanvirus | Gyeongsanvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 99.180 | AAI-based (high-confidence) | Gyeongsanvirus | Gyeongsanvirus DURPI | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_9 |
| MF979560 | Pectobacterium phage DU_PP_I | 144959 | 50.299 | Pectobacterium | Group I | Certrevirus | Certrevirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. | High-quality | High-quality | 98.780 | AAI-based (high-confidence) | Certrevirus | Certrevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF979561 | Pectobacterium phage DU_PP_II | 40142 | 47.917 | Pectobacterium | Group I | Unyawovirus | Unyawovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Unyawovirus | Unyawovirus DUPPII | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF979562 | Pectobacterium phage DU_PP_III | 11504 | 37.396 | Pectobacterium | Group I | Astrithrvirus | Astrithrvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MF979563 | Pectobacterium phage DU_PP_IV | 145233 | 50.315 | Pectobacterium | Group I | Certrevirus | Certrevirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. | High-quality | High-quality | 98.960 | AAI-based (high-confidence) | Certrevirus | Certrevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF979564 | Pectobacterium phage DU_PP_V | 106185 | 39.879 | Pectobacterium | Group I | Hongcheonvirus | Hongcheonvirus | Mccorquodalevirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. | High-quality | High-quality | 95.070 | AAI-based (high-confidence) | Hongcheonvirus | Hongcheonvirus DUPPV | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF988720 | Pseudoalteromonas phage J2-1_QLiu-2017 | 142204 | 37.920 | Pseudoalteromonas | Group I | Ounavirinae | Unclassified | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas phenolica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MF996376 | Escherichia phage SRT8 | 49579 | 48.034 | Escherichia | Group I | Sertoctavirus | Sertoctavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21 | High-quality | High-quality | 99.400 | AAI-based (high-confidence) | Sertoctavirus | Sertoctavirus SRT8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |