INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY006853 | Erythrobacter phage vB_EliS_R6L | 65675 | 66.520 | Erythrobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erythrobacter litoralis DSM 8509 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KY012363 | Mycobacterium phage Empress | 57155 | 61.519 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.220 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus empress | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_41 |
| KY014601 | Escherichia phage Utah | 59024 | 56.418 | Escherichia | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli SKB178 | High-quality | High-quality | 91.570 | AAI-based (high-confidence) | Chivirus | Chivirus iEPS5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY022433 | Vibrio phage J14 | 88973 | 45.401 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio neocaledonicus NC470 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KY030782 | Bacillus phage phi3T | 128375 | 34.959 | Bacillus | Group I | Spbetavirus | Spbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis str. 168 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_28;integrase orf_88;antirepressor orf_102 |
| KY038360 | Brevibacillus phage MRSA107 | 24435 | 58.142 | Brevibacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Low-quality | Genome-fragment | 38.100 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KY045851 | Pseudoalteromonas phage C5a | 35209 | 42.231 | Pseudoalteromonas | Group I | Catalunyavirus | Catalunyavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. RHS-str. 402 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Catalunyavirus | Catalunyavirus C5a | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_2 |
| KY053532 | Siphovirus 29632 | 29632 | 59.638 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_34 |
| KY056619 | Brucella phage Iz | 41446 | 48.120 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Perisivirus | Perisivirus Tb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY056620 | Staphylococcus phage P240 | 45985 | 33.111 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | Triavirus | Triavirus P240 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;integrase orf_60 |