Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KY065147Vibrio phage JSF412426137.084VibrioGroup I MohonavirusMohonavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio choleraeHigh-qualityHigh-quality92.950AAI-based (high-confidence) MohonavirusMohonavirus ICP1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_38
KY065148Vibrio phage JSF36939634.573VibrioGroup I PacinivirusPacinivirusGaffkyvirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio choleraeCompleteHigh-quality100.000DTR (high-confidence) PacinivirusPacinivirus VCO139Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_44
KY065149Vibrio phage JSF74631848.307VibrioGroup I TawavirusTawavirusUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio choleraeCompleteHigh-quality100.000DTR (high-confidence) TawavirusTawavirus JSF7Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY065449Streptococcus phage IPP53349538.895StreptococcusGroup I AdrianbuildvirusAdrianbuildvirusMcshanvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae SA48High-qualityHigh-quality99.970AAI-based (high-confidence) AdrianbuildvirusAdrianbuildvirus IPP5The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_1;cro orf_11;integrase orf_26
KY065450Streptococcus phage IPP84008040.127StreptococcusGroup I SpinunavirusSpinunavirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae USA23High-qualityHigh-quality95.690AAI-based (high-confidence) SpinunavirusSpinunavirus IPP8Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_5
KY065451Streptococcus phage IPP94118539.990StreptococcusGroup I SpinunavirusSpinunavirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae Finland6B-12High-qualityHigh-quality98.230AAI-based (high-confidence) SpinunavirusSpinunavirus IPP9Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_3;cro orf_8
KY065452Streptococcus phage IPP104064840.041StreptococcusGroup I SpinunavirusSpinunavirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 17F/1High-qualityHigh-quality97.150AAI-based (high-confidence) SpinunavirusSpinunavirus IPP10Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_5
KY065453Streptococcus phage IPP113751840.591StreptococcusGroup I MedawarvirusMedawarvirusMcshanvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 9N/2High-qualityHigh-quality100.000AAI-based (high-confidence) MedawarvirusMedawarvirus IPP11Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_4;antirepressor orf_12;integrase orf_33
KY065454Streptococcus phage IPP123442840.252StreptococcusGroup I MedawarvirusMedawarvirusMcshanvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 1_2High-qualityHigh-quality100.000AAI-based (high-confidence) MedawarvirusMedawarvirus IPP12Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_5;antirepressor orf_12;integrase orf_32
KY065455Streptococcus phage IPP143725238.441StreptococcusGroup I PaclarkvirusPaclarkvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae SA42High-qualityHigh-quality96.240AAI-based (high-confidence) PaclarkvirusPaclarkvirus IPP14Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6
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