INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY065147 | Vibrio phage JSF4 | 124261 | 37.084 | Vibrio | Group I | Mohonavirus | Mohonavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | High-quality | High-quality | 92.950 | AAI-based (high-confidence) | Mohonavirus | Mohonavirus ICP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_38 |
| KY065148 | Vibrio phage JSF3 | 69396 | 34.573 | Vibrio | Group I | Pacinivirus | Pacinivirus | Gaffkyvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | Complete | High-quality | 100.000 | DTR (high-confidence) | Pacinivirus | Pacinivirus VCO139 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_44 |
| KY065149 | Vibrio phage JSF7 | 46318 | 48.307 | Vibrio | Group I | Tawavirus | Tawavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | Complete | High-quality | 100.000 | DTR (high-confidence) | Tawavirus | Tawavirus JSF7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY065449 | Streptococcus phage IPP5 | 33495 | 38.895 | Streptococcus | Group I | Adrianbuildvirus | Adrianbuildvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae SA48 | High-quality | High-quality | 99.970 | AAI-based (high-confidence) | Adrianbuildvirus | Adrianbuildvirus IPP5 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_11;integrase orf_26 |
| KY065450 | Streptococcus phage IPP8 | 40080 | 40.127 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae USA23 | High-quality | High-quality | 95.690 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus IPP8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_5 |
| KY065451 | Streptococcus phage IPP9 | 41185 | 39.990 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae Finland6B-12 | High-quality | High-quality | 98.230 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus IPP9 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_3;cro orf_8 |
| KY065452 | Streptococcus phage IPP10 | 40648 | 40.041 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 17F/1 | High-quality | High-quality | 97.150 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus IPP10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_5 |
| KY065453 | Streptococcus phage IPP11 | 37518 | 40.591 | Streptococcus | Group I | Medawarvirus | Medawarvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 9N/2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Medawarvirus | Medawarvirus IPP11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_4;antirepressor orf_12;integrase orf_33 |
| KY065454 | Streptococcus phage IPP12 | 34428 | 40.252 | Streptococcus | Group I | Medawarvirus | Medawarvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 1_2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Medawarvirus | Medawarvirus IPP12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_5;antirepressor orf_12;integrase orf_32 |
| KY065455 | Streptococcus phage IPP14 | 37252 | 38.441 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae SA42 | High-quality | High-quality | 96.240 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus IPP14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6 |