INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KY000083	Pseudomonas phage PA10	91212	49.305	Pseudomonas	Group I	Pakpunavirus	Pakpunavirus	Skurskavirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	98.070	AAI-based (high-confidence)	Pakpunavirus	Pakpunavirus PA10	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY000084	Staphylococcus phage SCH1	18023	29.340	Staphylococcus	Group I	Rosenblumvirus	Rosenblumvirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Rosenblumvirus	Rosenblumvirus SCH1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY000085	Staphylococcus phage SCH111	18018	29.348	Staphylococcus	Group I	Rosenblumvirus	Rosenblumvirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Rosenblumvirus	Rosenblumvirus SCH1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY000218	Vojvodinavirus CN1	60160	64.058	Unspecified	Group I	Vojvodinavirus	Vojvodinavirus	Rabinowitzvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bordetella bronchiseptica ATCC 10580	High-quality	High-quality	98.390	AAI-based (high-confidence)	Vojvodinavirus	Vojvodinavirus CN1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_59
KY000219	Bordetella phage CN2	62030	64.034	Bordetella	Group I	Vojvodinavirus	Vojvodinavirus	Rabinowitzvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bordetella bronchiseptica ATCC 10580	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vojvodinavirus	Vojvodinavirus CN2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY000220	Bordetella phage FP1	60332	64.182	Bordetella	Group I	Vojvodinavirus	Vojvodinavirus	Rabinowitzvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bordetella bronchiseptica ATCC 10580	High-quality	High-quality	98.640	AAI-based (high-confidence)	Vojvodinavirus	Vojvodinavirus FP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY000221	Vojvodinavirus MW2	59779	63.974	Unspecified	Group I	Vojvodinavirus	Vojvodinavirus	Rabinowitzvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bordetella bronchiseptica ATCC 10580	High-quality	High-quality	97.870	AAI-based (high-confidence)	Vojvodinavirus	Vojvodinavirus MW2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY002061	Salmonella phage vB_SenS_Sergei	56051	43.493	Salmonella	Group I	Sashavirus	Sashavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Kentucky	High-quality	High-quality	98.730	AAI-based (high-confidence)	Sashavirus	Sashavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KY006473	Mycobacterium phage LeoAvram	47079	63.827	Mycobacterium	Group I	Backyardiganvirus	Backyardiganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	92.880	AAI-based (high-confidence)	Backyardiganvirus	Backyardiganvirus leoavram	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_64
KY006474	Mycobacterium phage Prann	68398	66.638	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis	High-quality	High-quality	98.450	AAI-based (high-confidence)	Pegunavirus	Pegunavirus suffolk	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_64