INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KU686195 | Synechococcus phage S-CAM1 | 197534 | 43.036 | Synechococcus | Group I | Anaposvirus | Anaposvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Anaposvirus | Anaposvirus socalone | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU686196 | Synechococcus phage S-CAM1 | 197533 | 43.045 | Synechococcus | Group I | Anaposvirus | Anaposvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Anaposvirus | Anaposvirus socalone | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU686197 | Synechococcus phage S-CAM3 | 197843 | 41.565 | Synechococcus | Group I | Charybdisvirus | Charybdisvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. | High-quality | High-quality | 99.860 | AAI-based (high-confidence) | Charybdisvirus | Charybdisvirus scam3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU686198 | Synechococcus phage S-CAM3 | 197800 | 41.552 | Synechococcus | Group I | Charybdisvirus | Charybdisvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. | High-quality | High-quality | 99.840 | AAI-based (high-confidence) | Charybdisvirus | Charybdisvirus scam3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU687347 | Citrobacter phage SH1 | 39434 | 50.953 | Citrobacter | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii CF5 | Complete | High-quality | 100.000 | DTR (high-confidence) | Teetrevirus | Teetrevirus SH1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU687348 | Citrobacter phage SH2 | 39158 | 50.723 | Citrobacter | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii CF5 | Complete | High-quality | 100.000 | DTR (high-confidence) | Teetrevirus | Teetrevirus SH2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU687349 | Citrobacter phage SH3 | 39444 | 50.641 | Citrobacter | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii CF3 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus SH3 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KU687350 | Citrobacter phage SH4 | 39274 | 52.587 | Citrobacter | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii CF3 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus SH4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KU687351 | Citrobacter phage SH5 | 39832 | 52.516 | Citrobacter | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii CF3 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus SH4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KU695581 | Mycobacterium phage Mulciber | 52428 | 63.724 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | parA orf_30;immunity orf_71 |