INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KU665491 | Bacillus phage Mgbh1 | 58951 | 45.414 | Bacillus | Group I | Magadivirus | Magadivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus sp. MGK1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Magadivirus | Magadivirus Mgbh1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_37 |
| KU666550 | Klebsiella phage KpV71 | 43267 | 53.979 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae B-7850 | Complete | High-quality | 100.000 | DTR (high-confidence) | Drulisvirus | Drulisvirus KpV71 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU678389 | Streptococcus phage 9871 | 32729 | 37.059 | Streptococcus | Group I | Piorkowskivirus | Piorkowskivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64987 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Piorkowskivirus | Piorkowskivirus pv9871 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_28 |
| KU678390 | Streptococcus phage 9872 | 33105 | 36.840 | Streptococcus | Group I | Piorkowskivirus | Piorkowskivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64987 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Piorkowskivirus | Piorkowskivirus pv9872 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_27 |
| KU678391 | Streptococcus phage 9873 | 32813 | 36.900 | Streptococcus | Group I | Piorkowskivirus | Piorkowskivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64987 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Piorkowskivirus | Piorkowskivirus pv9872 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_27 |
| KU678392 | Streptococcus phage 9874 | 32649 | 36.617 | Streptococcus | Group I | Piorkowskivirus | Piorkowskivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64987 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Piorkowskivirus | Piorkowskivirus pv9874 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KU682439 | Stenotrophomonas phage vB_SmaS-DLP_6 | 168489 | 55.754 | Stenotrophomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia D1571 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_215 |
| KU686192 | Synechococcus phage S-CAM1 | 197539 | 43.036 | Synechococcus | Group I | Anaposvirus | Anaposvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Anaposvirus | Anaposvirus socalone | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU686193 | Synechococcus phage S-CAM1 | 197533 | 43.039 | Synechococcus | Group I | Anaposvirus | Anaposvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Anaposvirus | Anaposvirus socalone | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU686194 | Synechococcus phage S-CAM1 | 197263 | 43.033 | Synechococcus | Group I | Anaposvirus | Anaposvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | Anaposvirus | Anaposvirus socalone | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |