INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KU599887 | Flavobacterium phage 2A | 46575 | 31.744 | Flavobacterium | Group I | Unahavirus | Unahavirus | Unclassified | Duneviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium psychrophilum A2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Unahavirus | Unahavirus uv2A | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU599888 | Flavobacterium phage 23T | 43226 | 31.389 | Flavobacterium | Group I | Unahavirus | Unahavirus | Unclassified | Duneviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium psychrophilum T23 | High-quality | High-quality | 96.210 | AAI-based (high-confidence) | Unahavirus | Unahavirus uv23T | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU599889 | Flavobacterium phage 1H | 39290 | 31.441 | Flavobacterium | Group I | Unahavirus | Unahavirus | Unclassified | Duneviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium psychrophilum MH1 | Medium-quality | Genome-fragment | 87.410 | AAI-based (high-confidence) | Unahavirus | Unahavirus uv1H | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU613353 | Mycobacterium phage Catalina | 53411 | 62.641 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus packman | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | parA orf_33;immunity orf_70 |
| KU640380 | Bacillus phage Shbh1 | 138081 | 36.428 | Bacillus | Group I | Shalavirus | Shalavirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus sp. MGK1/ERV9 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Shalavirus | Shalavirus Shbh1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU645528 | Acidianus tailed spindle virus | 70812 | 36.410 | Acidianus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Acidianus sp. CHAS | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_88 |
| KU647626 | Arthrobacter phage KellEzio | 58871 | 63.344 | Arthrobacter | Group I | Kelleziovirus | Kelleziovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kelleziovirus | Kelleziovirus kellezzio | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU647627 | Arthrobacter phage Kitkat | 58560 | 63.391 | Arthrobacter | Group I | Kelleziovirus | Kelleziovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 99.470 | AAI-based (high-confidence) | Kelleziovirus | Kelleziovirus kitkat | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU647628 | Arthrobacter phage Mudcat | 59443 | 45.104 | Arthrobacter | Group I | Mudcatvirus | Mudcatvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mudcatvirus | Mudcatvirus mudcat | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU647629 | Arthrobacter phage BarretLemon | 51290 | 60.903 | Arthrobacter | Group I | Marthavirus | Marthavirus | Unclassified | Berryhillviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Marthavirus | Marthavirus barretlemon | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |