INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KU695582	Mycobacterium phage McFly	52502	61.541	Mycobacterium	Group I	Gladiatorvirus	Gladiatorvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.610	AAI-based (high-confidence)	Gladiatorvirus	Gladiatorvirus ericB	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_32;immunity orf_68
KU708004	Pseudomonas phage phiAH14a	55060	58.135	Pseudomonas	Group I	Miecznikowavirus	Miecznikowavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp. ANT_H14	High-quality	High-quality	95.440	AAI-based (high-confidence)	Miecznikowavirus	Miecznikowavirus AH14a	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1;cro orf_37
KU708005	Pseudomonas phage phiAH14b	16812	58.904	Pseudomonas	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp. ANT_H14	Low-quality	Genome-fragment	14.250	HMM-based (lower-bound)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_1;antirepressor orf_5
KU716094	Mycobacterium phage Eidsmoe	52946	62.532	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	parA orf_32;immunity orf_68
KU716095	Mycobacterium phage Myxus	53425	62.647	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus packman	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	parA orf_32;immunity orf_70
KU726251	Enterobacteria phage SEGD1	239461	48.512	Enterobacteria	Group I	Seoulvirus	Seoulvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica	High-quality	High-quality	97.460	AAI-based (high-confidence)	Seoulvirus	Seoulvirus SPN3US	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_70
KU728633	Mycobacterium phage Bipper	77832	67.341	Mycobacterium	Group I	Bippervirus	Bippervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bippervirus	Bippervirus bipper	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_47;immunity orf_48
KU737344	Bacillus phage Nigalana	163041	38.750	Bacillus	Group I	Wphvirus	Wphvirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis subsp. kurstaki	Complete	High-quality	100.000	DTR (high-confidence)	Wphvirus	Wphvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KU737345	Bacillus phage Juglone	164227	37.786	Bacillus	Group I	Bequatrovirus	Bequatrovirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis subsp. kurstaki	Complete	High-quality	100.000	DTR (high-confidence)	Bequatrovirus	Bequatrovirus troll	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU737346	Bacillus phage Vinny	162865	38.000	Bacillus	Group I	Bastillevirus	Bastillevirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis subsp. kurstaki	Complete	High-quality	100.000	DTR (high-confidence)	Bastillevirus	Bastillevirus evoli	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic