INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT803873 | Ochrobactrum phage POA26 | 39103 | 54.886 | Ochrobactrum | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Ochrobactrum anthropi | Medium-quality | Genome-fragment | 85.220 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KT803874 | Ochrobactrum phage POA27 | 48006 | 54.087 | Ochrobactrum | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Ochrobactrum anthropi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_33 |
| KT803875 | Ochrobactrum phage POA22 | 46100 | 54.453 | Ochrobactrum | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Ochrobactrum anthropi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KT803876 | Ochrobactrum phage POA19 | 46754 | 54.049 | Ochrobactrum | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Ochrobactrum anthropi | Medium-quality | Genome-fragment | 62.300 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_31 |
| KT803877 | Burkholderia phage PE067 | 43649 | 64.483 | Burkholderia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia thailandensis | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_34 |
| KT804908 | Acinetobacter phage IME-200 | 41243 | 39.313 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Friunavirus | Friunavirus IME200 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT804923 | Pseudomonas phage C11 | 94109 | 49.391 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa clinical strain TJC422 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_87 |
| KT809302 | Haloarcula californiae icosahedral virus 1 | 31314 | 68.126 | Haloarcula | Group I | Alphasphaerolipovirus | Alphasphaerolipovirus | Unclassified | Sphaerolipoviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Haloarcula californiae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KT809368 | Staphylococcus phage P282 | 41960 | 32.960 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.030 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus P282 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26;cro orf_32;cro orf_33 |
| KT809369 | Staphylococcus phage P630 | 40448 | 33.747 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 95.760 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus P630 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_23;cro orf_27;antirepressor orf_30;antirepressor orf_33;integrase orf_59 |