INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT818595 | Mycobacterium phage Pepe | 50515 | 64.001 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.290 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_32;immunity orf_67 |
| KT820175 | Ruegeria phage 45A6 | 53160 | 61.544 | Ruegeria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ruegeria mobilis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_34 |
| KT825490 | Escherichia phage C119 | 47319 | 44.238 | Escherichia | Group I | Rogunavirus | Rogunavirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O:157 EC-48 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rogunavirus | Rogunavirus C119 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT852574 | Yersinia phage vB_YenP_AP10 | 39235 | 51.757 | Yersinia | Group I | Apdecimavirus | Apdecimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica 6471/76-c serotype O:3 | Complete | High-quality | 100.000 | DTR (high-confidence) | Apdecimavirus | Apdecimavirus AP10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT852578 | Bacillus phage BMBtp1 | 35838 | 34.896 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis YBT-1765 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_29;antirepressor orf_35 |
| KT870145 | Roseobacter phage DSS3P8 | 146135 | 56.348 | Roseobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ruegeria pomeroyi DSS-3 | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_61 |
| KT876724 | Flavobacterium phage FpV4 | 88308 | 27.218 | Flavobacterium | Group I | Fipvunavirus | Fipvunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium psychrophilum 950106-1/1 | High-quality | High-quality | 97.700 | AAI-based (high-confidence) | Fipvunavirus | Fipvunavirus Fpv4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT876725 | Flavobacterium phage FpV9 | 42696 | 32.008 | Flavobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium psychrophilum 950106-1/1 | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KT876726 | Flavobacterium phage FpV21 | 89748 | 26.948 | Flavobacterium | Group I | Fipvunavirus | Fipvunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium psychrophilum 950106-1/1 | High-quality | High-quality | 99.380 | AAI-based (high-confidence) | Fipvunavirus | Fipvunavirus Fpv1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT878766 | Staphylococcus phage P1105 | 42282 | 33.463 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus P1105 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_27;cro orf_33;cro orf_34;antirepressor orf_35;integrase orf_66 |