INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT724718 | Brucella phage BiPBO1 | 46877 | 53.320 | Brucella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella inopinata strain BO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_22;integrase orf_36 |
| KT725776 | Bacillus phage vB_BceS-MY192 | 44696 | 34.979 | Bacillus | Group I | Hubeivirus | Hubeivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus 11-192 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hubeivirus | Hubeivirus MY192 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_31;integrase orf_55 |
| KT728930 | Affertcholeramvirus preCTX2 | 5215 | 46.654 | Unspecified | Group II | Affertcholeramvirus | Affertcholeramvirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae biovar El Tor 9961 | Medium-quality | Genome-fragment | 70.870 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KT728931 | Vibrio phage pre-CTX | 5712 | 47.146 | Vibrio | Group II | Affertcholeramvirus | Affertcholeramvirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae biovar El Tor R-13169 | Medium-quality | Genome-fragment | 77.620 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KT734862 | Pseudomonas phage PAE1 | 62181 | 64.233 | Pseudomonas | Group I | Yuavirus | Yuavirus | Rabinowitzvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa strain PAO9505 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Yuavirus | Yuavirus PAE1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT736033 | Pseudomonas phage K8 | 93879 | 49.355 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAK | Complete | High-quality | 100.000 | DTR (high-confidence) | Pakpunavirus | Pakpunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT755656 | Paenibacillus phage Tripp | 54439 | 48.315 | Paenibacillus | Group I | Halcyonevirus | Halcyonevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 9545 | Complete | High-quality | 100.000 | DTR (high-confidence) | Halcyonevirus | Halcyonevirus tripp | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;antirepressor orf_33 |
| KT778546 | Ochrobactrum phage POA9219 | 37634 | 54.259 | Ochrobactrum | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Ochrobactrum anthropi | Medium-quality | Genome-fragment | 88.210 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_27 |
| KT780304 | Bacillus phage VMY22 | 18609 | 36.364 | Bacillus | Group I | Mingyongvirus | Mingyongvirus | Unclassified | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus MYB41-22 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mingyongvirus | Mingyongvirus VMY22 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT783672 | Arthrobacter phage TymAbreu | 15556 | 60.112 | Arthrobacter | Group I | Decurrovirus | Decurrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 99.700 | AAI-based (high-confidence) | Decurrovirus | Decurrovirus decurro | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |