Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KT630645Salmonella phage SEN43350953.365SalmonellaGroup I SenquatrovirusSenquatrovirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. salamae 200/01 IIHigh-qualityHigh-quality100.000AAI-based (high-confidence) SenquatrovirusSenquatrovirus SEN4Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;integrase orf_39
KT630646Salmonella phage SEN53350953.365SalmonellaGroup I SenquatrovirusSenquatrovirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. salamae 241/01 IIHigh-qualityHigh-quality100.000AAI-based (high-confidence) SenquatrovirusSenquatrovirus SEN4Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;integrase orf_39
KT630647Salmonella phage SEN83520351.936SalmonellaGroup I FelsduovirusFelsduovirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. salamae 244/03 IIHigh-qualityHigh-quality99.830AAI-based (high-confidence) FelsduovirusFelsduovirus SEN8The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_32;cro orf_33
KT630648Salmonella phage SEN224133847.828SalmonellaGroup I LederbergvirusLederbergvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. diarizonae 89/00 IIIbHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_25;cro orf_40;antirepressor orf_41
KT630649Salmonella phage SEN344074049.912SalmonellaGroup I BrunovirusBrunovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. diarizonae 519/03 IIIbHigh-qualityHigh-quality100.000AAI-based (high-confidence) BrunovirusBrunovirus SEN34Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_30;cro orf_42
KT716399Pseudomonas phage POR15534955.506PseudomonasGroup I PorunavirusPorunavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas oryzihabitans J81PHigh-qualityHigh-quality100.000AAI-based (high-confidence) PorunavirusPorunavirus POR1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT716493Mycobacterium phage Caelakin5137463.925MycobacteriumGroup I BackyardiganvirusBackyardiganvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) BackyardiganvirusBackyardiganvirus peachesCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_31;immunity orf_63
KT717083Streptococcus phage 733673338.826StreptococcusGroup I MoineauvirusMoineauvirusUnclassifiedAliceevansviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.330AAI-based (high-confidence) MoineauvirusMoineauvirus mv73Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_26;cro orf_27
KT717084Streptococcus phage 533423938.900StreptococcusGroup I MoineauvirusMoineauvirusUnclassifiedAliceevansviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality92.990AAI-based (high-confidence) MoineauvirusMoineauvirus mv53Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_23
KT717085Streptococcus phage 1283459338.999StreptococcusGroup I MoineauvirusMoineauvirusUnclassifiedAliceevansviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality93.270AAI-based (high-confidence) MoineauvirusMoineauvirus mv128Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_23
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