INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT630645 | Salmonella phage SEN4 | 33509 | 53.365 | Salmonella | Group I | Senquatrovirus | Senquatrovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. salamae 200/01 II | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Senquatrovirus | Senquatrovirus SEN4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;integrase orf_39 |
| KT630646 | Salmonella phage SEN5 | 33509 | 53.365 | Salmonella | Group I | Senquatrovirus | Senquatrovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. salamae 241/01 II | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Senquatrovirus | Senquatrovirus SEN4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;integrase orf_39 |
| KT630647 | Salmonella phage SEN8 | 35203 | 51.936 | Salmonella | Group I | Felsduovirus | Felsduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. salamae 244/03 II | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | Felsduovirus | Felsduovirus SEN8 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_32;cro orf_33 |
| KT630648 | Salmonella phage SEN22 | 41338 | 47.828 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. diarizonae 89/00 IIIb | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_25;cro orf_40;antirepressor orf_41 |
| KT630649 | Salmonella phage SEN34 | 40740 | 49.912 | Salmonella | Group I | Brunovirus | Brunovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. diarizonae 519/03 IIIb | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Brunovirus | Brunovirus SEN34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_30;cro orf_42 |
| KT716399 | Pseudomonas phage POR1 | 55349 | 55.506 | Pseudomonas | Group I | Porunavirus | Porunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas oryzihabitans J81P | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Porunavirus | Porunavirus POR1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT716493 | Mycobacterium phage Caelakin | 51374 | 63.925 | Mycobacterium | Group I | Backyardiganvirus | Backyardiganvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Backyardiganvirus | Backyardiganvirus peaches | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_63 |
| KT717083 | Streptococcus phage 73 | 36733 | 38.826 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.330 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus mv73 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_26;cro orf_27 |
| KT717084 | Streptococcus phage 53 | 34239 | 38.900 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 92.990 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus mv53 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_23 |
| KT717085 | Streptococcus phage 128 | 34593 | 38.999 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 93.270 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus mv128 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_23 |