Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KT355474Mycobacterium phage Frosty244190166.571MycobacteriumGroup I LiefievirusLiefievirusGclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality97.370AAI-based (high-confidence) LiefievirusLiefievirus haloCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_32;immunity orf_33
KT355475Arthrobacter phage Sandman1563060.032ArthrobacterGroup I DecurrovirusDecurrovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Arthrobacter sp. ATCC 21022High-qualityHigh-quality100.000AAI-based (high-confidence) DecurrovirusDecurrovirus decurroCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT359365Mycobacterium phage DaHudson5084164.053MycobacteriumGroup I MicrowolfvirusMicrowolfvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) MicrowolfvirusMicrowolfvirus microwolfCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_32;immunity orf_69
KT361649Paenibacillus phage Fern3799541.858PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae NRRL 2605High-qualityHigh-quality94.790AAI-based (high-confidence) FernvirusFernvirus fernCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;antirepressor orf_33;antirepressor orf_37
KT361650Paenibacillus phage Willow3799441.857PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae NRRL 2605High-qualityHigh-quality94.790AAI-based (high-confidence) FernvirusFernvirus fernCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;cro orf_30;antirepressor orf_33;antirepressor orf_37
KT361651Paenibacillus phage Harrison4424940.157PaenibacillusGroup I HarrisonvirusHarrisonvirusGochnauervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae NRRL 2605High-qualityHigh-quality100.000AAI-based (high-confidence) HarrisonvirusHarrisonvirus harrisonCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_36;antirepressor orf_45
KT361652Paenibacillus phage Xenia4114941.525PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae NRRL 2605High-qualityHigh-quality100.000AAI-based (high-confidence) FernvirusFernvirus shellyCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_32;antirepressor orf_36;antirepressor orf_40;integrase orf_59
KT361653Paenibacillus phage Paisley4417240.043PaenibacillusGroup I HarrisonvirusHarrisonvirusGochnauervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae NRRL 2605High-qualityHigh-quality99.830AAI-based (high-confidence) HarrisonvirusHarrisonvirus harrisonCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_36;antirepressor orf_45
KT361654Paenibacillus phage Vegas4565343.642PaenibacillusGroup I VegasvirusVegasvirusGochnauervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae NRRL 2605High-qualityHigh-quality100.000AAI-based (high-confidence) VegasvirusVegasvirus vegasCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_31;antirepressor orf_37
KT361655Paenibacillus phage Hayley4425643.459PaenibacillusGroup I VegasvirusVegasvirusGochnauervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae NRRL 2605High-qualityHigh-quality100.000AAI-based (high-confidence) VegasvirusVegasvirus vegasCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_30;antirepressor orf_36
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