INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT355474 | Mycobacterium phage Frosty24 | 41901 | 66.571 | Mycobacterium | Group I | Liefievirus | Liefievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.370 | AAI-based (high-confidence) | Liefievirus | Liefievirus halo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_33 |
| KT355475 | Arthrobacter phage Sandman | 15630 | 60.032 | Arthrobacter | Group I | Decurrovirus | Decurrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Decurrovirus | Decurrovirus decurro | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT359365 | Mycobacterium phage DaHudson | 50841 | 64.053 | Mycobacterium | Group I | Microwolfvirus | Microwolfvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Microwolfvirus | Microwolfvirus microwolf | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_69 |
| KT361649 | Paenibacillus phage Fern | 37995 | 41.858 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae NRRL 2605 | High-quality | High-quality | 94.790 | AAI-based (high-confidence) | Fernvirus | Fernvirus fern | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;antirepressor orf_33;antirepressor orf_37 |
| KT361650 | Paenibacillus phage Willow | 37994 | 41.857 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae NRRL 2605 | High-quality | High-quality | 94.790 | AAI-based (high-confidence) | Fernvirus | Fernvirus fern | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;cro orf_30;antirepressor orf_33;antirepressor orf_37 |
| KT361651 | Paenibacillus phage Harrison | 44249 | 40.157 | Paenibacillus | Group I | Harrisonvirus | Harrisonvirus | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae NRRL 2605 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Harrisonvirus | Harrisonvirus harrison | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36;antirepressor orf_45 |
| KT361652 | Paenibacillus phage Xenia | 41149 | 41.525 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae NRRL 2605 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus shelly | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_32;antirepressor orf_36;antirepressor orf_40;integrase orf_59 |
| KT361653 | Paenibacillus phage Paisley | 44172 | 40.043 | Paenibacillus | Group I | Harrisonvirus | Harrisonvirus | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae NRRL 2605 | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | Harrisonvirus | Harrisonvirus harrison | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36;antirepressor orf_45 |
| KT361654 | Paenibacillus phage Vegas | 45653 | 43.642 | Paenibacillus | Group I | Vegasvirus | Vegasvirus | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae NRRL 2605 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vegasvirus | Vegasvirus vegas | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;antirepressor orf_37 |
| KT361655 | Paenibacillus phage Hayley | 44256 | 43.459 | Paenibacillus | Group I | Vegasvirus | Vegasvirus | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae NRRL 2605 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vegasvirus | Vegasvirus vegas | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_30;antirepressor orf_36 |