INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KT339177	Lactococcus phage GE1	24847	37.872	Lactococcus	Group I	Chertseyvirus	Chertseyvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus garvieae INS1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Chertseyvirus	Chertseyvirus GE1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT339321	Acinetobacter phage phiAB6	40570	39.468	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii 54149	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus AB6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT344895	Staphylococcus phage phiJB	43012	34.730	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus Jevons B	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus JB	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_5;antirepressor orf_9;integrase orf_39
KT345706	Vibrio phage vB_VorS-PVo5	80578	40.577	Vibrio	Group I	Ermolyevavirinae	Unclassified	Ermolyevavirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio ordalii VO5	Medium-quality	Genome-fragment	71.280	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
KT347313	Mycobacterium phage Brusacoram	47618	66.994	Mycobacterium	Group I	Fishburnevirus	Fishburnevirus	Pclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.180	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus brusacoram	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_32;antirepressor orf_35
KT347314	Mycobacterium phage Phreak	41901	66.566	Mycobacterium	Group I	Liefievirus	Liefievirus	Gclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.370	AAI-based (high-confidence)	Liefievirus	Liefievirus halo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_33
KT353109	Cronobacter phage PBES 02	149732	50.725	Cronobacter	Group I	Certrevirus	Certrevirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cronobacter sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Certrevirus	Certrevirus PBES02	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KT355471	Arthrobacter phage Decurro	15524	60.236	Arthrobacter	Group I	Decurrovirus	Decurrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.490	AAI-based (high-confidence)	Decurrovirus	Decurrovirus decurro	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT355472	Mycobacterium phage Cedasite	41901	66.562	Mycobacterium	Group I	Liefievirus	Liefievirus	Gclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.370	AAI-based (high-confidence)	Liefievirus	Liefievirus halo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_33
KT355473	Arthrobacter phage Jessica	15556	60.112	Arthrobacter	Group I	Decurrovirus	Decurrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.700	AAI-based (high-confidence)	Decurrovirus	Decurrovirus decurro	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic