INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT337354 | Streptococcus phage phiARI0462 | 40498 | 40.543 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 09B05356 | High-quality | High-quality | 97.980 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus ARI0462 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_69 |
| KT337355 | Streptococcus phage phiARI0468-1 | 41063 | 40.806 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 08B06220 | Complete | High-quality | 100.000 | DTR (high-confidence) | Hinxtonvirus | Hinxtonvirus ARI04681 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_50;cro orf_59 |
| KT337356 | Streptococcus phage phiARI0468-2 | 42186 | 40.362 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 08B07540 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus ARI04682 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_66 |
| KT337358 | Streptococcus phage phiARI0468-4 | 37395 | 38.131 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 09B10874 | High-quality | High-quality | 96.800 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus ARI04684 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_48;integrase orf_53 |
| KT337359 | Streptococcus phage phiARI0468b-3 | 31936 | 39.764 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 09B10874 | Medium-quality | Genome-fragment | 78.270 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus ARI0468b3 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KT337360 | Streptococcus phage phiARI0578 | 28706 | 39.810 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 09B10380 | Medium-quality | Genome-fragment | 80.670 | AAI-based (high-confidence) | Malkevirus | Malkevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_20;antirepressor orf_36;integrase orf_45 |
| KT337362 | Streptococcus phage phiARI0598b | 35788 | 40.097 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 10B04316 | Medium-quality | Genome-fragment | 87.570 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_45;antirepressor orf_52 |
| KT337364 | Streptococcus phage phiARI0639b | 32821 | 37.832 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 09B10381 | Medium-quality | Genome-fragment | 84.770 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_48 |
| KT337365 | Streptococcus phage phiARI0746 | 33181 | 39.586 | Streptococcus | Group I | Norfolkplacevirus | Norfolkplacevirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 10B04751 | Medium-quality | Genome-fragment | 83.500 | AAI-based (high-confidence) | Norfolkplacevirus | Norfolkplacevirus ARI0746 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_48;integrase orf_53 |
| KT337370 | Streptococcus phage phiARI0923 | 33477 | 38.952 | Streptococcus | Group I | Adrianbuildvirus | Adrianbuildvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 10B00617 | High-quality | High-quality | 99.790 | AAI-based (high-confidence) | Adrianbuildvirus | Adrianbuildvirus ARI0923 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_23;cro orf_25;antirepressor orf_34;cro orf_41;integrase orf_44 |