Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KT337354Streptococcus phage phiARI04624049840.543StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 09B05356High-qualityHigh-quality97.980AAI-based (high-confidence) HinxtonvirusHinxtonvirus ARI0462The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_69
KT337355Streptococcus phage phiARI0468-14106340.806StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 08B06220CompleteHigh-quality100.000DTR (high-confidence) HinxtonvirusHinxtonvirus ARI04681The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_50;cro orf_59
KT337356Streptococcus phage phiARI0468-24218640.362StreptococcusGroup I SpinunavirusSpinunavirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 08B07540High-qualityHigh-quality100.000AAI-based (high-confidence) SpinunavirusSpinunavirus ARI04682The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_66
KT337358Streptococcus phage phiARI0468-43739538.131StreptococcusGroup I PaclarkvirusPaclarkvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 09B10874High-qualityHigh-quality96.800AAI-based (high-confidence) PaclarkvirusPaclarkvirus ARI04684Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_48;integrase orf_53
KT337359Streptococcus phage phiARI0468b-33193639.764StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 09B10874Medium-qualityGenome-fragment78.270AAI-based (high-confidence) HinxtonvirusHinxtonvirus ARI0468b3The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
KT337360Streptococcus phage phiARI05782870639.810StreptococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 09B10380Medium-qualityGenome-fragment80.670AAI-based (high-confidence) MalkevirusMalkevirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_20;antirepressor orf_36;integrase orf_45
KT337362Streptococcus phage phiARI0598b3578840.097StreptococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 10B04316Medium-qualityGenome-fragment87.570AAI-based (high-confidence) HinxtonvirusHinxtonvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_45;antirepressor orf_52
KT337364Streptococcus phage phiARI0639b3282137.832StreptococcusGroup I PaclarkvirusPaclarkvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 09B10381Medium-qualityGenome-fragment84.770AAI-based (high-confidence) PaclarkvirusPaclarkvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_48
KT337365Streptococcus phage phiARI07463318139.586StreptococcusGroup I NorfolkplacevirusNorfolkplacevirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 10B04751Medium-qualityGenome-fragment83.500AAI-based (high-confidence) NorfolkplacevirusNorfolkplacevirus ARI0746The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateantirepressor orf_48;integrase orf_53
KT337370Streptococcus phage phiARI09233347738.952StreptococcusGroup I AdrianbuildvirusAdrianbuildvirusMcshanvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 10B00617High-qualityHigh-quality99.790AAI-based (high-confidence) AdrianbuildvirusAdrianbuildvirus ARI0923The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_23;cro orf_25;antirepressor orf_34;cro orf_41;integrase orf_44
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