Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KT321476Mycobacterium phage Zeenon15529264.735MycobacteriumGroup I BixzunavirusBixzunavirusCeeclamvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality97.340AAI-based (high-confidence) BixzunavirusBixzunavirus quasimodoCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT326767Mycobacterium phage Texage5008164.044MycobacteriumGroup I VeracruzvirusVeracruzvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) VeracruzvirusVeracruzvirus veracruzCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_29;immunity orf_63
KT326768Mycobacterium phage Tasp145140963.923MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.010AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_36;immunity orf_71
KT336320Streptococcus phage phiNJ35380239.748StreptococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus suis NJ3Medium-qualityGenome-fragment74.570AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_3;integrase orf_57
KT336321Streptococcus phage phiSC0708075763839.606StreptococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus suis SC070807CompleteHigh-quality100.000Provirus (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_55
KT337339Streptococcus phage phiARI00044110540.659StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 08B01757High-qualityHigh-quality99.190AAI-based (high-confidence) HinxtonvirusHinxtonvirus ARI0004The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
KT337340Streptococcus phage phiARI00314188741.208StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 08B08535High-qualityHigh-quality100.000AAI-based (high-confidence) HinxtonvirusHinxtonvirus ARI0031The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_51;antirepressor orf_58
KT337341Streptococcus phage phiARI0131-14292739.597StreptococcusGroup I SpinunavirusSpinunavirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 09B07772CompleteHigh-quality100.000DTR (high-confidence) SpinunavirusSpinunavirus ARI01311Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_3;cro orf_8;integrase orf_10;cro orf_68
KT337342Streptococcus phage phiARI0131-23456340.187StreptococcusGroup I MedawarvirusMedawarvirusMcshanvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 10B01058High-qualityHigh-quality99.600AAI-based (high-confidence) MedawarvirusMedawarvirus ARI01312Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_26;antirepressor orf_46;cro orf_47;integrase orf_54
KT337352Streptococcus phage phiARI0460-14180739.690StreptococcusGroup I SpinunavirusSpinunavirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 08B03577High-qualityHigh-quality99.240AAI-based (high-confidence) SpinunavirusSpinunavirus ARI04601Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_55;cro orf_61;integrase orf_64
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