INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT321476 | Mycobacterium phage Zeenon | 155292 | 64.735 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.340 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus quasimodo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT326767 | Mycobacterium phage Texage | 50081 | 64.044 | Mycobacterium | Group I | Veracruzvirus | Veracruzvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Veracruzvirus | Veracruzvirus veracruz | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;immunity orf_63 |
| KT326768 | Mycobacterium phage Tasp14 | 51409 | 63.923 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.010 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_71 |
| KT336320 | Streptococcus phage phiNJ3 | 53802 | 39.748 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis NJ3 | Medium-quality | Genome-fragment | 74.570 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;integrase orf_57 |
| KT336321 | Streptococcus phage phiSC070807 | 57638 | 39.606 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis SC070807 | Complete | High-quality | 100.000 | Provirus (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_55 |
| KT337339 | Streptococcus phage phiARI0004 | 41105 | 40.659 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 08B01757 | High-quality | High-quality | 99.190 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus ARI0004 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KT337340 | Streptococcus phage phiARI0031 | 41887 | 41.208 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 08B08535 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus ARI0031 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_51;antirepressor orf_58 |
| KT337341 | Streptococcus phage phiARI0131-1 | 42927 | 39.597 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 09B07772 | Complete | High-quality | 100.000 | DTR (high-confidence) | Spinunavirus | Spinunavirus ARI01311 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_3;cro orf_8;integrase orf_10;cro orf_68 |
| KT337342 | Streptococcus phage phiARI0131-2 | 34563 | 40.187 | Streptococcus | Group I | Medawarvirus | Medawarvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 10B01058 | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | Medawarvirus | Medawarvirus ARI01312 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;antirepressor orf_46;cro orf_47;integrase orf_54 |
| KT337352 | Streptococcus phage phiARI0460-1 | 41807 | 39.690 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 08B03577 | High-quality | High-quality | 99.240 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus ARI04601 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_55;cro orf_61;integrase orf_64 |