Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KT287080Enterobacter phage phiEap-24049151.972EnterobacterGroup I GuernseyvirinaeUnclassifiedGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter aerogenes 3-SPHigh-qualityHigh-quality96.180AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
KT307976Bacillus phage AvesoBmore16743137.690BacillusGroup I BequatrovirusBequatrovirusBastillevirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus thuringiensis subsp. kurstakiCompleteHigh-quality100.000DTR (high-confidence) BequatrovirusBequatrovirus avesobmoreCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT309034Mycobacterium phage Dante5965261.793MycobacteriumGroup I CheoctovirusCheoctovirusGracegardnervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) CheoctovirusCheoctovirus danteThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_40;immunity orf_42;antirepressor orf_43
KT319597Listeria phage WIL-26678436.632ListeriaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Listeria monocytogenesLow-qualityGenome-fragment48.380AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
KT319598Listeria phage WIL-23547135.494ListeriaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Listeria monocytogenesLow-qualityGenome-fragment25.700AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
KT319599Listeria phage WIL-22769736.018ListeriaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Listeria monocytogenesLow-qualityGenome-fragment20.070AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
KT321314Enterobacter phage phiEap-13913351.688EnterobacterGroup I EapunavirusEapunavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter aerogenesCompleteHigh-quality100.000DTR (high-confidence) EapunavirusEapunavirus Eap1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT321315Enterobacter phage phiEap-317581442.005EnterobacterGroup I SlopekvirusSlopekvirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter aerogenesHigh-qualityHigh-quality98.680AAI-based (high-confidence) SlopekvirusSlopekvirus eap3Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT321316Achromobacter phage phiAxp-26222060.111AchromobacterGroup I FengtaivirusFengtaivirusUnclassifiedCasjensviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Achromobacter xylosoxidansHigh-qualityHigh-quality100.000AAI-based (high-confidence) FengtaivirusFengtaivirus Axp2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT321317Achromobacter phage phiAxp-37282555.202AchromobacterGroup I DongdastvirusDongdastvirusRothmandenesvirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Achromobacter xylosoxidansCompleteHigh-quality100.000DTR (high-confidence) DongdastvirusDongdastvirus Axp3Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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