INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT279576 | Mycobacterium phage Phatniss | 57293 | 61.336 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.480 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus phatniss | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38;immunity orf_40;antirepressor orf_41 |
| KT281789 | Mycobacterium phage Enkosi | 59052 | 67.183 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.470 | AAI-based (high-confidence) | Anayavirus | Anayavirus amelie | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_39;immunity orf_41 |
| KT281790 | Mycobacterium phage HyRo | 153714 | 64.686 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.350 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus hyro | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_188 |
| KT281791 | Mycobacterium phage Lolly9 | 75816 | 59.316 | Mycobacterium | Group I | Lumosvirus | Lumosvirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Lumosvirus | Lumosvirus lolly9 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_35;immunity orf_37 |
| KT281792 | Mycobacterium phage PopTart | 55094 | 61.644 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 95.650 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus poptart | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_37;immunity orf_39;antirepressor orf_40 |
| KT281793 | Mycobacterium phage Seagreen | 57766 | 61.832 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_41;cro orf_45;antirepressor orf_46 |
| KT281794 | Mycobacterium phage Snenia | 75626 | 59.276 | Mycobacterium | Group I | Lumosvirus | Lumosvirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.480 | AAI-based (high-confidence) | Lumosvirus | Lumosvirus lumos | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_35;immunity orf_37 |
| KT281795 | Mycobacterium phage XFactor | 55617 | 61.715 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.570 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus xfactor | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_37;integrase orf_40;cro orf_43 |
| KT281796 | Mycobacterium phage Zakhe101 | 69653 | 65.457 | Mycobacterium | Group I | Corndogvirus | Corndogvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.770 | AAI-based (high-confidence) | Corndogvirus | Corndogvirus firecracker | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT285706 | Mycobacterium phage Pioneer | 53219 | 62.587 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_70 |