Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KT279576Mycobacterium phage Phatniss5729361.336MycobacteriumGroup I CheoctovirusCheoctovirusGracegardnervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.480AAI-based (high-confidence) CheoctovirusCheoctovirus phatnissThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_38;immunity orf_40;antirepressor orf_41
KT281789Mycobacterium phage Enkosi5905267.183MycobacteriumGroup I AnayavirusAnayavirusWeiservirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality96.470AAI-based (high-confidence) AnayavirusAnayavirus amelieThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_39;immunity orf_41
KT281790Mycobacterium phage HyRo15371464.686MycobacteriumGroup I BixzunavirusBixzunavirusCeeclamvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality96.350AAI-based (high-confidence) BixzunavirusBixzunavirus hyroCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateimmunity orf_188
KT281791Mycobacterium phage Lolly97581659.316MycobacteriumGroup I LumosvirusLumosvirusLclasvirinaeVilmaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.730AAI-based (high-confidence) LumosvirusLumosvirus lolly9Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_35;immunity orf_37
KT281792Mycobacterium phage PopTart5509461.644MycobacteriumGroup I CheoctovirusCheoctovirusGracegardnervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality95.650AAI-based (high-confidence) CheoctovirusCheoctovirus poptartThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_37;immunity orf_39;antirepressor orf_40
KT281793Mycobacterium phage Seagreen5776661.832MycobacteriumGroup I CheoctovirusCheoctovirusGracegardnervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) CheoctovirusCheoctovirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_41;cro orf_45;antirepressor orf_46
KT281794Mycobacterium phage Snenia7562659.276MycobacteriumGroup I LumosvirusLumosvirusLclasvirinaeVilmaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.480AAI-based (high-confidence) LumosvirusLumosvirus lumosCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_35;immunity orf_37
KT281795Mycobacterium phage XFactor5561761.715MycobacteriumGroup I CheoctovirusCheoctovirusGracegardnervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality96.570AAI-based (high-confidence) CheoctovirusCheoctovirus xfactorThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateimmunity orf_37;integrase orf_40;cro orf_43
KT281796Mycobacterium phage Zakhe1016965365.457MycobacteriumGroup I CorndogvirusCorndogvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality96.770AAI-based (high-confidence) CorndogvirusCorndogvirus firecrackerCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT285706Mycobacterium phage Pioneer5321962.587MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateimmunity orf_70
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