INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KT186243	Staphylococcus phage vB_SauS_phi2	44222	33.716	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	95.390	AAI-based (high-confidence)	Triavirus	Triavirus tv2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_27;integrase orf_54
KT187252	Bacillus phage PBC6	157147	39.910	Bacillus	Group I	Tsarbombavirus	Tsarbombavirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus	High-quality	High-quality	98.790	AAI-based (high-confidence)	Tsarbombavirus	Tsarbombavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT206225	Mycobacterium phage Phlei	50418	60.062	Mycobacterium	Group I	Phleivirus	Phleivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium phlei	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phleivirus	Phleivirus Phlei	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_26
KT207918	Bacillus phage Eyuki	162252	38.773	Bacillus	Group I	Wphvirus	Wphvirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis kurstaki	Complete	High-quality	100.000	DTR (high-confidence)	Wphvirus	Wphvirus megatron	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KT221033	Streptomyces phage SF1	43150	69.089	Streptomyces	Group I	Sfunavirus	Sfunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces flavovirens	Medium-quality	Genome-fragment	86.360	AAI-based (high-confidence)	Sfunavirus	Sfunavirus SF1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT221034	Streptomyces phage SF3	60934	69.112	Streptomyces	Group I	Siftrevirus	Siftrevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces flavovirens	High-quality	High-quality	100.000	AAI-based (high-confidence)	Siftrevirus	Siftrevirus SF3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_36
KT222940	Mycobacterium phage Kinbote	53746	67.445	Mycobacterium	Group I	Gilesvirus	Gilesvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.970	AAI-based (high-confidence)	Gilesvirus	Gilesvirus giles	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_29
KT222941	Mycobacterium phage NelitzaMV	72790	63.054	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	95.620	AAI-based (high-confidence)	Kostyavirus	Kostyavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_48;immunity orf_51
KT222942	Mycobacterium phage Dusk	75339	63.018	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.960	AAI-based (high-confidence)	Kostyavirus	Kostyavirus toto	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_49;immunity orf_52
KT224359	Bacillus phage TsarBomba	162486	40.074	Bacillus	Group I	Tsarbombavirus	Tsarbombavirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis subsp. kurstaki	Complete	High-quality	100.000	DTR (high-confidence)	Tsarbombavirus	Tsarbombavirus tsarbomba	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic