INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KT184313	Enterobacteria phage KhF1	88356	38.773	Enterobacteria	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O145:NM SJ24	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus KhF1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT184314	Enterobacteria phage KhF2	88309	38.830	Enterobacteria	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O145:NM SJ24	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus KhF1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT184315	Enterobacteria phage KhF3	88016	38.862	Enterobacteria	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O121:H19 08023	High-quality	High-quality	99.950	AAI-based (high-confidence)	Felixounavirus	Felixounavirus KhF1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT184316	Enterobacteria phage XTG1	89635	38.900	Enterobacteria	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O121:H19 08023	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus KhF1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT184390	Streptomyces phage Izzy	50113	65.911	Streptomyces	Group I	Likavirus	Likavirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces griseus ATCC 10137	High-quality	High-quality	98.850	AAI-based (high-confidence)	Likavirus	Likavirus izzy	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_28;integrase orf_46
KT184391	Streptomyces phage Lannister	50165	65.743	Streptomyces	Group I	Likavirus	Likavirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces venezuelae ATCC 10712	High-quality	High-quality	98.600	AAI-based (high-confidence)	Likavirus	Likavirus lannister	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_29;integrase orf_47
KT184661	Yersinia phage vB_YenP_ISAO8	41449	53.840	Yersinia	Group I	Aghbyvirus	Aghbyvirus	Melnykvirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia enterocolitica	High-quality	High-quality	98.910	AAI-based (high-confidence)	Aghbyvirus	Aghbyvirus ISAO8	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT184694	Mycobacterium phage Smeadley	52392	61.414	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus astro	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_28;immunity orf_79
KT186228	Streptomyces phage Amela	49452	65.613	Streptomyces	Group I	Camvirus	Camvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces venezuelae ATCC 10712	High-quality	High-quality	99.880	AAI-based (high-confidence)	Camvirus	Camvirus amela	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_30;integrase orf_51
KT186229	Streptomyces phage Verse	49483	65.602	Streptomyces	Group I	Camvirus	Camvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces venezuelae ATCC 10712	High-quality	High-quality	100.000	AAI-based (high-confidence)	Camvirus	Camvirus amela	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_31;integrase orf_51