INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT232076 | Escherichia phage Lambda | 49205 | 49.747 | Escherichia | Group I | Lambdavirus | Lambdavirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 CV601 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lambdavirus | Lambdavirus lambda | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_43;cro orf_44;integrase orf_61 |
| KT239446 | Klebsiella phage JD18 | 166313 | 39.599 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Jiaodavirus | Jiaodavirus jd18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT240186 | Dickeya phage BF25/12 | 43872 | 52.186 | Dickeya | Group I | Stompvirus | Stompvirus | Corkvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya sp. B16 | High-quality | High-quality | 99.460 | AAI-based (high-confidence) | Stompvirus | Stompvirus BF2512 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT246485 | Mycobacterium phage OBUpride | 53790 | 67.505 | Mycobacterium | Group I | Gilesvirus | Gilesvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.050 | AAI-based (high-confidence) | Gilesvirus | Gilesvirus giles | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29 |
| KT246486 | Mycobacterium phage Chadwick | 49421 | 59.786 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.400 | AAI-based (high-confidence) | Benedictvirus | Benedictvirus chadwick | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;immunity orf_62 |
| KT253150 | Rhodobacter phage RcSaxon | 36081 | 65.442 | Rhodobacter | Group I | Cronusvirus | Cronusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodobacter capsulatus YW1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cronusvirus | Cronusvirus cronus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT254130 | Pbunalikevirus phiVader | 65762 | 54.925 | Unspecified | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Chyrseobacterium sp. | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus PB1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT254131 | Pbunalikevirus phiMoody | 65908 | 54.902 | Unspecified | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Chyrseobacterium sp. | High-quality | High-quality | 99.780 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus PB1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT254132 | Pbunalikevirus phiHabibi | 65763 | 54.918 | Unspecified | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Chyrseobacterium sp. | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus PB1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT254133 | Pbunalikevirus phiFenriz | 65760 | 54.938 | Unspecified | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Chyrseobacterium sp. | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus PB1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |