INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KR063279	Gordonia phage GMA3	77779	51.263	Gordonia	Group I	Gamtrevirus	Gamtrevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia malaquae BEN700	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gamtrevirus	Gamtrevirus GMA3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR063280	Gordonia phage GMA6	83324	58.179	Gordonia	Group I	Bendigovirus	Bendigovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia malaquae CON67	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bendigovirus	Bendigovirus GMA6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR063281	Gordonia phage GMA2	103424	53.372	Gordonia	Group I	Gimaduovirus	Gimaduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia malaquae A448	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gimaduovirus	Gimaduovirus GMA2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR072689	Paracoccus phage Shpa	38261	64.674	Paracoccus	Group I	Vhulanivirus	Vhulanivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paracoccus sp. HS3	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vhulanivirus	Vhulanivirus Shpa	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR073660	Escherichia phage pro147	32675	50.742	Escherichia	Group I	Peduovirus	Peduovirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli DE048	High-quality	High-quality	100.000	AAI-based (high-confidence)	Peduovirus	Peduovirus pro147	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_42
KR073661	Escherichia phage pro483	29237	52.981	Escherichia	Group I	Peduovirus	Peduovirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli DE048	High-quality	High-quality	91.730	AAI-based (high-confidence)	Peduovirus	Peduovirus pro483	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1
KR080193	Mycobacterium phage Luchador	53387	62.111	Mycobacterium	Group I	Luchadorvirus	Luchadorvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Luchadorvirus	Luchadorvirus luchador	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_37;immunity orf_76
KR080194	Mycobacterium phage Vincenzo	72139	68.909	Mycobacterium	Group I	Coopervirus	Coopervirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coopervirus	Coopervirus vincenzo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR080195	Mycobacterium phage Phayonce	49203	66.673	Mycobacterium	Group I	Phayoncevirus	Phayoncevirus	Pclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.770	AAI-based (high-confidence)	Phayoncevirus	Phayoncevirus phayonce	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_33;immunity orf_34;antirepressor orf_37
KR080196	Mycobacterium phage Momo	154553	64.744	Mycobacterium	Group I	Bixzunavirus	Bixzunavirus	Ceeclamvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.870	AAI-based (high-confidence)	Bixzunavirus	Bixzunavirus quasimodo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic