INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KR080197 | Mycobacterium phage FlagStaff | 44576 | 68.521 | Mycobacterium | Group I | Avocadovirus | Avocadovirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | Avocadovirus | Avocadovirus flagstaff | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KR080198 | Mycobacterium phage Cambiare | 45161 | 68.798 | Mycobacterium | Group I | Avocadovirus | Avocadovirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Avocadovirus | Avocadovirus cambiare | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KR080199 | Mycobacterium phage Baee | 70270 | 67.645 | Mycobacterium | Group I | Acadianvirus | Acadianvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Acadianvirus | Acadianvirus baee | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR080200 | Mycobacterium phage AlanGrant | 72109 | 68.926 | Mycobacterium | Group I | Coopervirus | Coopervirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Coopervirus | Coopervirus vincenzo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR080201 | Mycobacterium phage Nerujay | 53455 | 63.693 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_73 |
| KR080202 | Mycobacterium phage MOOREtheMARYer | 44492 | 68.581 | Mycobacterium | Group I | Pinnievirus | Pinnievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.380 | AAI-based (high-confidence) | Pinnievirus | Pinnievirus moorethemaryer | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KR080203 | Mycobacterium phage OrangeOswald | 68674 | 67.536 | Mycobacterium | Group I | Pipefishvirus | Pipefishvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.390 | AAI-based (high-confidence) | Pipefishvirus | Pipefishvirus athena | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR080204 | Mycobacterium phage Mindy | 75796 | 62.965 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus kostya | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_48;immunity orf_51 |
| KR080205 | Mycobacterium phage Corofin | 68685 | 67.513 | Mycobacterium | Group I | Pipefishvirus | Pipefishvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.400 | AAI-based (high-confidence) | Pipefishvirus | Pipefishvirus athena | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR080206 | Mycobacterium phage ShedlockHolmes | 61081 | 67.301 | Mycobacterium | Group I | Keshuvirus | Keshuvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.310 | AAI-based (high-confidence) | Keshuvirus | Keshuvirus shedlockholmes | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_41;immunity orf_44 |