INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KR052481 | Sinorhizobium phage phiM19 | 188047 | 49.027 | Sinorhizobium | Group I | Emdodecavirus | Emdodecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium meliloti | High-quality | High-quality | 95.360 | AAI-based (high-confidence) | Emdodecavirus | Emdodecavirus M7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_110 |
| KR052482 | Sinorhizobium phage phiN3 | 206713 | 49.075 | Sinorhizobium | Group I | Emdodecavirus | Emdodecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium meliloti | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Emdodecavirus | Emdodecavirus N3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_126 |
| KR053194 | Gordonia phage GAL1 | 49979 | 63.547 | Gordonia | Group I | Galunavirus | Galunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia alkanivorans strain CON72 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Galunavirus | Galunavirus GAL1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;cro orf_35;antirepressor orf_39 |
| KR053195 | Gordonia phage GMA1 | 41207 | 65.712 | Gordonia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia malaquae strain BEN700 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_29 |
| KR053196 | Tsukamurella phage TPA4 | 56212 | 70.542 | Tsukamurella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tsukamurella paurometabola strain CON55 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_37 |
| KR053197 | Gordonia phage GRU3 | 17727 | 66.509 | Gordonia | Group I | Grutrevirus | Grutrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia rubropertincta strain CON38 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Grutrevirus | Grutrevirus GRU3 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_17 |
| KR053198 | Gordonia phage GMA5 | 17562 | 66.353 | Gordonia | Group I | Grutrevirus | Grutrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia malaquae BEN700 | High-quality | High-quality | 99.640 | AAI-based (high-confidence) | Grutrevirus | Grutrevirus GMA5 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_18 |
| KR053199 | Gordonia phage GMA4 | 45537 | 66.368 | Gordonia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia malaquae strain BEN700 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_31 |
| KR053200 | Gordonia phage GTE6 | 56982 | 67.797 | Gordonia | Group I | Dexdertvirus | Dexdertvirus | Schenleyvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae strain CON34 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dexdertvirus | Dexdertvirus GTE6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR053201 | Gordonia phage GTE8 | 67617 | 65.957 | Gordonia | Group I | Foxborovirus | Foxborovirus | Emilbogenvirinae | Zierdtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae strain G232 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Foxborovirus | Foxborovirus GTE8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |