INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KR011062 | Tsukamurella phage TIN2 | 76964 | 58.920 | Tsukamurella | Group I | Tinduovirus | Tinduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tsukamurella inchonensis BEN701 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tinduovirus | Tinduovirus TIN2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR011063 | Tsukamurella phage TIN3 | 76269 | 59.291 | Tsukamurella | Group I | Tinduovirus | Tinduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tsukamurella inchonensis strain BEN701 | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | Tinduovirus | Tinduovirus TIN3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR011064 | Tsukamurella phage TIN4 | 76268 | 59.290 | Tsukamurella | Group I | Tinduovirus | Tinduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tsukamurella inchonensis strain BEN701 | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | Tinduovirus | Tinduovirus TIN3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR014248 | Escherichia phage vB_EcoM_AYO145A | 87372 | 39.003 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O145:NM | High-quality | High-quality | 99.220 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus AYO145A | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR029086 | Mycobacterium phage PDRPv | 69110 | 66.351 | Mycobacterium | Group I | Pegunavirus | Pegunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.470 | AAI-based (high-confidence) | Pegunavirus | Pegunavirus oline | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR029087 | Mycobacterium phage PDRPxv | 69171 | 66.347 | Mycobacterium | Group I | Pegunavirus | Pegunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Pegunavirus | Pegunavirus oline | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR049063 | Enterococcus phage EFLK1 | 130952 | 35.888 | Enterococcus | Group I | Kochikohdavirus | Kochikohdavirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 94.350 | AAI-based (high-confidence) | Kochikohdavirus | Kochikohdavirus EFLK1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR052142 | Pseudomonas phage vB_PaeP_MAG4 | 72979 | 54.820 | Pseudomonas | Group I | Litunavirus | Litunavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa clinical isolate PA21 | Complete | High-quality | 100.000 | DTR (high-confidence) | Litunavirus | Litunavirus Mag4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR052143 | Pseudomonas phage vB_PaeM_MAG1 | 94555 | 49.248 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa clinical isolate PA31 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pakpunavirus | Pakpunavirus MAG1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR052480 | Sinorhizobium phage phiM7 | 188427 | 49.037 | Sinorhizobium | Group I | Emdodecavirus | Emdodecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium meliloti | High-quality | High-quality | 95.580 | AAI-based (high-confidence) | Emdodecavirus | Emdodecavirus M7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_109 |