INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KP861230	Acinetobacter phage YMC11/11/R3177	47575	39.832	Acinetobacter	Group I	Jauervirus	Jauervirus	Unclassified	Buchnerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter sp.	High-quality	High-quality	99.160	AAI-based (high-confidence)	Jauervirus	Jauervirus R3177	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_9;cro orf_24
KP861231	Acinetobacter phage YMC11/12/R1215	44866	37.594	Acinetobacter	Group I	Obolenskvirus	Obolenskvirus	Unclassified	Hirszfeldviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter sp.	High-quality	High-quality	99.890	AAI-based (high-confidence)	Obolenskvirus	Obolenskvirus AbC62	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KP869100	Escherichia typing phage 1	88531	38.849	Escherichia	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus TP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869101	Escherichia coli O157 typing phage 3	168733	37.627	Escherichia	Group I	Mosigvirus	Mosigvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	99.510	AAI-based (high-confidence)	Mosigvirus	Mosigvirus 0157tp3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869102	Escherichia coli O157 typing phage 4	141707	43.541	Escherichia	Group I	Vequintavirus	Vequintavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vequintavirus	Vequintavirus JES2013	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869103	Escherichia coli O157 typing phage 5	137973	43.559	Escherichia	Group I	Vequintavirus	Vequintavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	98.350	AAI-based (high-confidence)	Vequintavirus	Vequintavirus V5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869104	Escherichia coli O157 typing phage 6	160570	37.628	Escherichia	Group I	Mosigvirus	Mosigvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	94.660	AAI-based (high-confidence)	Mosigvirus	Mosigvirus 0157tp3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869105	Escherichia coli O157 typing phage 7	167747	35.402	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	99.760	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus vtec	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869106	Escherichia coli O157 typing phage 8	88998	38.926	Escherichia	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus wV8	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869107	Escherichia coli O157 typing phage 9	43991	48.208	Escherichia	Group I	Uetakevirus	Uetakevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	100.000	AAI-based (high-confidence)	Uetakevirus	Uetakevirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_12