INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KP869108	Escherichia coli O157 typing phage 10	39234	48.947	Escherichia	Group I	Uetakevirus	Uetakevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	Complete	High-quality	100.000	DTR (high-confidence)	Uetakevirus	Uetakevirus phiV10	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_12
KP869109	Escherichia coli O157 typing phage 11	88771	38.887	Escherichia	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus wV8	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869110	Escherichia coli O157 typing phage 12	88632	38.907	Escherichia	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	Complete	High-quality	100.000	DTR (high-confidence)	Felixounavirus	Felixounavirus wV8	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869111	Escherichia coli O157 typing phage 13	162417	37.324	Escherichia	Group I	Mosigvirus	Mosigvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	95.580	AAI-based (high-confidence)	Mosigvirus	Mosigvirus 0157tp3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869112	Escherichia coli O157 typing phage 14	131952	43.374	Escherichia	Group I	Vequintavirus	Vequintavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	94.070	AAI-based (high-confidence)	Vequintavirus	Vequintavirus TP14	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP869113	Escherichia coli O157 typing phage 15	92632	37.600	Escherichia	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus TP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP876465	Streptomyces phage YDN12	56528	69.210	Streptomyces	Group I	Woodruffvirus	Woodruffvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces griseus subsp. griseus ATCC 10137	High-quality	High-quality	97.040	AAI-based (high-confidence)	Woodruffvirus	Woodruffvirus YDN12	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP876466	Streptomyces phage TP1604	57168	69.208	Streptomyces	Group I	Woodruffvirus	Woodruffvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces griseus subsp. griseus ATCC 10137	High-quality	High-quality	98.090	AAI-based (high-confidence)	Woodruffvirus	Woodruffvirus TP1604	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP881232	Sinorhizobium phage phiM9	149218	49.763	Sinorhizobium	Group I	Emnonavirus	Emnonavirus	Unclassified	Pootjesviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Sinorhizobium meliloti	High-quality	High-quality	100.000	AAI-based (high-confidence)	Emnonavirus	Emnonavirus phiM9	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP881332	Staphylococcus phage Stau2	133798	29.974	Staphylococcus	Group I	Silviavirus	Silviavirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	98.300	AAI-based (high-confidence)	Silviavirus	Silviavirus stau2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic