INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KP687431 | Staphylococcus phage IME-SA1 | 140218 | 30.328 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.030 | AAI-based (high-confidence) | Kayvirus | Kayvirus G1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP687432 | Staphylococcus phage IME-SA2 | 140906 | 30.328 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | Kayvirus | Kayvirus G1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP696447 | Bacillus phage Stahl | 80148 | 35.257 | Bacillus | Group I | Slashvirus | Slashvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus megaterium Km Sp- | Complete | High-quality | 100.000 | DTR (high-confidence) | Slashvirus | Slashvirus stahl | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_97 |
| KP696448 | Bacillus phage Stills | 80798 | 35.481 | Bacillus | Group I | Slashvirus | Slashvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus megaterium Km Sp- | Complete | High-quality | 100.000 | DTR (high-confidence) | Slashvirus | Slashvirus stills | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_97 |
| KP703175 | ANMV-1 virus | 38465 | 44.492 | Unspecified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | uncultured archaeon | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KP708985 | Klebsiella phage vB_KpnP_SU503 | 43809 | 53.749 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 07RAFM-KPN-503 | High-quality | High-quality | 99.790 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus SU503 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP708986 | Klebsiella phage vB_KpnP_SU552A | 43595 | 54.153 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 07RAFM-KPN-552 | High-quality | High-quality | 99.290 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus SU552A | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP719132 | Enterobacteria phage JenP1 | 60754 | 43.232 | Enterobacteria | Group I | Nonagvirus | Nonagvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 subsr. MG1655 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nonagvirus | Nonagvirus JenP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP719133 | Enterobacteria phage JenP2 | 59802 | 43.214 | Enterobacteria | Group I | Nonagvirus | Nonagvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 subsr. MG1655 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nonagvirus | Nonagvirus JenP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP719134 | Enterobacteria phage JenK1 | 60747 | 43.862 | Enterobacteria | Group I | Nonagvirus | Nonagvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 subsr. MG1655 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nonagvirus | Nonagvirus JenK1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |