INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KP735928 | Staphylococcus phage IME-SA4 | 41843 | 33.982 | Staphylococcus | Group I | Bronfenbrennervirinae | Unclassified | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus haemolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_27;antirepressor orf_31 |
| KP774835 | Citrobacter phage CVT22 | 47636 | 41.632 | Citrobacter | Group I | Citrovirus | Citrovirus | Unclassified | Zobellviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter sp. TM1552 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Citrovirus | Citrovirus coptotermitis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP790008 | Gordonia phage GordTnk2 | 75987 | 50.694 | Gordonia | Group I | Gordtnkvirus | Gordtnkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia sp. | High-quality | High-quality | 99.620 | AAI-based (high-confidence) | Gordtnkvirus | Gordtnkvirus gordtnk2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_68 |
| KP790009 | Gordonia phage Gmala1 | 75167 | 50.798 | Gordonia | Group I | Gordtnkvirus | Gordtnkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia sp. | High-quality | High-quality | 98.550 | AAI-based (high-confidence) | Gordtnkvirus | Gordtnkvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_62 |
| KP790010 | Gordonia phage GordDuk1 | 76276 | 50.653 | Gordonia | Group I | Gordtnkvirus | Gordtnkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gordtnkvirus | Gordtnkvirus gordtnk2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_67 |
| KP790011 | Gordonia phage Gsput1 | 43505 | 62.832 | Gordonia | Group I | Gesputvirus | Gesputvirus | Ruthgordonvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia sputi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gesputvirus | Gesputvirus gsput1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28 |
| KP791805 | Enterobacter phage E-2 | 36051 | 50.639 | Enterobacter | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter cloacae | High-quality | High-quality | 90.330 | AAI-based (high-confidence) | Teetrevirus | Teetrevirus E2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP791806 | Enterobacter phage E-3 | 31522 | 50.771 | Enterobacter | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter cloacae | Medium-quality | Genome-fragment | 78.980 | AAI-based (high-confidence) | Teetrevirus | Teetrevirus E3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP791807 | Enterobacter phage E-4 | 39142 | 50.521 | Enterobacter | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter cloacae | High-quality | High-quality | 98.090 | AAI-based (high-confidence) | Teetrevirus | Teetrevirus E2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP792622 | Verrucomicrobia phage P8625 | 32894 | 50.967 | Verrucomicrobia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Puniceicoccales sp. IMCC8625 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |