INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KP682383 | Escherichia phage PA30 | 62708 | 49.903 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA30 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682384 | Escherichia phage PA32 | 62708 | 49.904 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA32 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_54;antirepressor orf_90 |
| KP682385 | Escherichia phage PA33 | 62708 | 49.903 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA33 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682386 | Escherichia phage PA36 | 64021 | 49.980 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA36 | High-quality | High-quality | 97.590 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_94 |
| KP682387 | Escherichia phage PA42 | 62708 | 49.904 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA42 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682388 | Escherichia phage PA44 | 62708 | 49.903 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA44 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682389 | Escherichia phage PA45 | 65334 | 50.064 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA45 | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_28;cro orf_29;antirepressor orf_40;antirepressor orf_60;antirepressor orf_96 |
| KP682390 | Escherichia phage PA50 | 62708 | 49.901 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA50 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682391 | Escherichia phage PA51 | 61388 | 49.818 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA51 | High-quality | High-quality | 93.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_52;antirepressor orf_88 |
| KP682392 | Escherichia phage PA52 | 65334 | 50.067 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA52 | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_57;antirepressor orf_96 |