INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KP682373 | Escherichia phage PA5 | 62708 | 49.901 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA5 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682374 | Escherichia phage PA8 | 63584 | 50.167 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA8 | Complete | High-quality | 100.000 | DTR (high-confidence) | Oslovirus | Oslovirus PA2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_12;antirepressor orf_32;cro orf_35;cro orf_36;antirepressor orf_54 |
| KP682375 | Escherichia phage PA11 | 62708 | 49.901 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA11 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682376 | Escherichia phage PA12 | 61388 | 49.818 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA12 | High-quality | High-quality | 93.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_52;antirepressor orf_88 |
| KP682377 | Escherichia phage PA16 | 62708 | 49.903 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA16 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682378 | Escherichia phage PA18 | 62708 | 49.903 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA18 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682379 | Escherichia phage PA21 | 62708 | 49.904 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA21 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |
| KP682380 | Escherichia phage PA27 | 64021 | 49.984 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA27 | High-quality | High-quality | 97.600 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_57;antirepressor orf_93 |
| KP682381 | Escherichia phage PA28 | 61292 | 49.741 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA28 | Complete | High-quality | 100.000 | DTR (high-confidence) | Traversvirus | Traversvirus PA28 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_8;cro orf_30;antirepressor orf_43;antirepressor orf_59 |
| KP682382 | Escherichia phage PA29 | 62708 | 49.901 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli PA29 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91 |