INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KP340287	Pseudomonas phage phiKT28	66381	55.644	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PAO1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pbunavirus	Pbunavirus NH4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP340288	Pseudomonas phage phiKTN6	65994	55.513	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PAO1	High-quality	High-quality	99.910	AAI-based (high-confidence)	Pbunavirus	Pbunavirus KTN6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP343639	Ralstonia phage phiITL-1	38731	62.751	Ralstonia	Group I	Serkorvirus	Serkorvirus	Unclassified	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Ralstonia solanacearum Coatlan	High-quality	High-quality	97.080	AAI-based (high-confidence)	Serkorvirus	Serkorvirus ITL1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP399677	Listeria phage vB_LmoS_188	38392	35.872	Listeria	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	99.790	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_26;antirepressor orf_35
KP399678	Listeria phage vB_LmoS_293	40759	36.861	Listeria	Group I	Aquingentivirus	Aquingentivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Aquingentivirus	Aquingentivirus av293	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_30;cro orf_35;antirepressor orf_44
KP411017	Bacillus phage Palmer	40000	40.668	Bacillus	Group I	Pagevirus	Pagevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus megaterium strain Km Sp-	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pagevirus	Pagevirus palmer	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KP658157	Klebsiella phage 1513	49462	50.611	Klebsiella	Group I	Webervirus	Webervirus	Unclassified	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae KP 1513	High-quality	High-quality	99.850	AAI-based (high-confidence)	Webervirus	Webervirus wv1513	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP671755	Vibrio phage ValKK3	248088	41.235	Vibrio	Group I	Schizotequatrovirus	Schizotequatrovirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio alginolyticus ATCC 17749	High-quality	High-quality	93.150	AAI-based (high-confidence)	Schizotequatrovirus	Schizotequatrovirus valkk3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP682371	Escherichia phage PA2	63569	50.169	Escherichia	Group I	Oslovirus	Oslovirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli PA2	Complete	High-quality	100.000	DTR (high-confidence)	Oslovirus	Oslovirus PA2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;antirepressor orf_9;antirepressor orf_14;antirepressor orf_34;cro orf_37;cro orf_38;antirepressor orf_54
KP682372	Escherichia phage PA4	62708	49.903	Escherichia	Group I	Traversvirus	Traversvirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli PA4	High-quality	High-quality	95.610	AAI-based (high-confidence)	Traversvirus	Traversvirus II	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_26;cro orf_27;antirepressor orf_38;antirepressor orf_55;antirepressor orf_91