Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KP296791Paenibacillus phage Diva3724642.072PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae ATCC 9545High-qualityHigh-quality92.780AAI-based (high-confidence) FernvirusFernvirus divaCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_32;antirepressor orf_36
KP296792Bacteriophage Lily4495242.730UnspecifiedGroup I LilyvirusLilyvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae ATCC 9545High-qualityHigh-quality99.480AAI-based (high-confidence) LilyvirusLilyvirus lilyCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_47;integrase orf_69
KP296793Paenibacillus phage Rani3799041.779PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae ATCC 9545High-qualityHigh-quality94.880AAI-based (high-confidence) FernvirusFernvirus raniCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_26;integrase orf_27;antirepressor orf_30;antirepressor orf_32;antirepressor orf_36
KP296794Bacteriophage Redbud3797141.813UnspecifiedGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae ATCC 9545High-qualityHigh-quality94.840AAI-based (high-confidence) FernvirusFernvirus raniCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_26;integrase orf_27;antirepressor orf_30;antirepressor orf_32;antirepressor orf_36
KP296795Paenibacillus phage Shelly4115241.534PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae ATCC 9545High-qualityHigh-quality100.000AAI-based (high-confidence) FernvirusFernvirus shellyCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_32;antirepressor orf_36;antirepressor orf_40;integrase orf_59
KP296796Paenibacillus phage Sitara4372441.593PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvae ATCC 25747High-qualityHigh-quality100.000AAI-based (high-confidence) FernvirusFernvirus sitaraCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_32;integrase orf_33;antirepressor orf_36;antirepressor orf_38;antirepressor orf_42
KP308307Escherichia phage 172-17726641.984EscherichiaGroup I KuravirusKuravirusGordonclarkvirinaeMtkvariviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli 172CompleteHigh-quality100.000DTR (high-confidence) KuravirusKuravirus kv1721Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KP313531Citrobacter phage phiCFP-13862550.278CitrobacterGroup I TeetrevirusTeetrevirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter freundii P10159CompleteHigh-quality100.000DTR (high-confidence) TeetrevirusTeetrevirus CFP1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KP313532Achromobacter phage phiAxp-14504556.017AchromobacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Achromobacter xylosoxidans A22732High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
KP339049Enterococcus phage EFDG114758937.203EnterococcusGroup I SchiekvirusSchiekvirusBrockvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisHigh-qualityHigh-quality96.730AAI-based (high-confidence) SchiekvirusSchiekvirus EFDG1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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