INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KP296791 | Paenibacillus phage Diva | 37246 | 42.072 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 9545 | High-quality | High-quality | 92.780 | AAI-based (high-confidence) | Fernvirus | Fernvirus diva | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_32;antirepressor orf_36 |
| KP296792 | Bacteriophage Lily | 44952 | 42.730 | Unspecified | Group I | Lilyvirus | Lilyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 9545 | High-quality | High-quality | 99.480 | AAI-based (high-confidence) | Lilyvirus | Lilyvirus lily | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_47;integrase orf_69 |
| KP296793 | Paenibacillus phage Rani | 37990 | 41.779 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 9545 | High-quality | High-quality | 94.880 | AAI-based (high-confidence) | Fernvirus | Fernvirus rani | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_26;integrase orf_27;antirepressor orf_30;antirepressor orf_32;antirepressor orf_36 |
| KP296794 | Bacteriophage Redbud | 37971 | 41.813 | Unspecified | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 9545 | High-quality | High-quality | 94.840 | AAI-based (high-confidence) | Fernvirus | Fernvirus rani | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_26;integrase orf_27;antirepressor orf_30;antirepressor orf_32;antirepressor orf_36 |
| KP296795 | Paenibacillus phage Shelly | 41152 | 41.534 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 9545 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus shelly | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_32;antirepressor orf_36;antirepressor orf_40;integrase orf_59 |
| KP296796 | Paenibacillus phage Sitara | 43724 | 41.593 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 25747 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus sitara | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_32;integrase orf_33;antirepressor orf_36;antirepressor orf_38;antirepressor orf_42 |
| KP308307 | Escherichia phage 172-1 | 77266 | 41.984 | Escherichia | Group I | Kuravirus | Kuravirus | Gordonclarkvirinae | Mtkvariviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 172 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kuravirus | Kuravirus kv1721 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP313531 | Citrobacter phage phiCFP-1 | 38625 | 50.278 | Citrobacter | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii P10159 | Complete | High-quality | 100.000 | DTR (high-confidence) | Teetrevirus | Teetrevirus CFP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP313532 | Achromobacter phage phiAxp-1 | 45045 | 56.017 | Achromobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans A22732 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KP339049 | Enterococcus phage EFDG1 | 147589 | 37.203 | Enterococcus | Group I | Schiekvirus | Schiekvirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 96.730 | AAI-based (high-confidence) | Schiekvirus | Schiekvirus EFDG1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |