INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KM067278	Pseudomonas phage vB_PaeP_PPA-ABTNL	43227	62.442	Pseudomonas	Group I	Phikmvvirus	Phikmvvirus	Krylovirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PA5-1-1	Complete	High-quality	100.000	DTR (high-confidence)	Phikmvvirus	Phikmvvirus ABTNL	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM083128	Mycobacterium phage Sparky	63334	65.164	Mycobacterium	Group I	Sparkyvirus	Sparkyvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacteruim smegmatis mc2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sparkyvirus	Sparkyvirus sparky	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_38;immunity orf_39;cro orf_40
KM091442	Lactococcus phage phi15	31945	34.575	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus sp. 936	High-quality	High-quality	100.000	AAI-based (high-confidence)	Skunavirus	Skunavirus sv15	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM091443	Lactococcus phage phi93	31841	34.971	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus sp. 936	High-quality	High-quality	100.000	AAI-based (high-confidence)	Skunavirus	Skunavirus sv109	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM091444	Lactococcus phage phi145	30862	34.901	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus sp. 936	High-quality	High-quality	100.000	AAI-based (high-confidence)	Skunavirus	Skunavirus sv145	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM092515	Escherichia phage HY02	86252	38.921	Escherichia	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	97.950	AAI-based (high-confidence)	Felixounavirus	Felixounavirus HY02	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM101117	Mycobacterium phage LizLemon	67496	68.949	Mycobacterium	Group I	Rosebushvirus	Rosebushvirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.890	AAI-based (high-confidence)	Rosebushvirus	Rosebushvirus rosebush	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM101118	Mycobacterium phage Swirley	49717	61.044	Mycobacterium	Group I	Benedictvirus	Benedictvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.330	AAI-based (high-confidence)	Benedictvirus	Benedictvirus swirley	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_27;immunity orf_63
KM101119	Mycobacterium phage Tiffany	50768	63.991	Mycobacterium	Group I	Microwolfvirus	Microwolfvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterum smegmatis mc2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Microwolfvirus	Microwolfvirus microwolf	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_69
KM101120	Mycobacterium phage Trike	44716	64.498	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	Medium-quality	Genome-fragment	88.640	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_28