INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KJ944830 | Pseudoalteromonas phage B8b | 20209 | 43.397 | Pseudoalteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. QC-44 | Low-quality | Genome-fragment | 42.390 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KJ944841 | Mycobacterium phage Cheetobro | 57253 | 67.967 | Mycobacterium | Group I | Fionnbharthvirus | Fionnbharthvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.450 | AAI-based (high-confidence) | Fionnbharthvirus | Fionnbharthvirus fionnbharth | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_44;immunity orf_46;cro orf_47 |
| KJ959591 | Pseudomonas phage PAN70 | 39673 | 62.120 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 97.980 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KJ959632 | Mycobacterium phage Equemioh13 | 53042 | 63.506 | Mycobacterium | Group I | Turbidovirus | Turbidovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Turbidovirus | Turbidovirus centaur | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_69 |
| KJ997912 | Enterobacteria phage MED1 | 5386 | 44.801 | Enterobacteria | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Escherichia coli SMQXXXX | High-quality | High-quality | 91.560 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KM000061 | Pseudoalteromonas phage B8b | 19353 | 43.942 | Pseudoalteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. QC-44 | Low-quality | Genome-fragment | 40.510 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KM044272 | Escherichia phage vB_EcoP_SU10 | 77327 | 42.063 | Escherichia | Group I | Kuravirus | Kuravirus | Gordonclarkvirinae | Mtkvariviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ECOR10 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kuravirus | Kuravirus SU10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM051843 | Bacillus phage Bobb | 160281 | 41.331 | Bacillus | Group I | Agatevirus | Agatevirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pumilus SAFR32 | Complete | High-quality | 100.000 | DTR (high-confidence) | Agatevirus | Agatevirus bobb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM058087 | Cronobacter phage vB_CsaP_Ss1 | 42205 | 46.068 | Cronobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii ATCC BAA 894 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KM066034 | Mycobacterium phage Inventum | 57052 | 61.376 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.040 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus inventum | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42 |