INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KJ804259	Staphylococcus phage 6ec	93794	29.296	Staphylococcus	Group I	Sextaecvirus	Sextaecvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Homo sapiens	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sextaecvirus	Sextaecvirus sextaec	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_55
KJ817802	Acinetobacter phage YMC-13-01-C62	44844	37.599	Acinetobacter	Group I	Obolenskvirus	Obolenskvirus	Unclassified	Hirszfeldviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii YMC/13/01/C62	High-quality	High-quality	99.840	AAI-based (high-confidence)	Obolenskvirus	Obolenskvirus AbC62	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KJ829260	Mycobacterium phage YungJamal	70214	65.340	Mycobacterium	Group I	Corndogvirus	Corndogvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.550	AAI-based (high-confidence)	Corndogvirus	Corndogvirus corndog	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ832078	Enterobacteria phage Sf101	38742	47.445	Enterobacteria	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella flexneri serotype 7a	High-quality	High-quality	98.740	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_17;cro orf_36;antirepressor orf_37;antirepressor orf_54;integrase orf_56
KJ847052	Idiomarinaceae phage 1N2-2	34773	51.989	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Idiomarinaceae bacterium N2-2	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
KJ858521	Aeromonas phage pAh6-C	53744	52.826	Aeromonas	Group I	Pahsextavirus	Pahsextavirus	Nefertitivirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas hydrophila JUNAH	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahsextavirus	Pahsextavirus pAh6C	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ888149	Staphylococcus phage MCE-2014	141907	30.385	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus BCP88	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kayvirus	Kayvirus MCE2014	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ909655	Escherichia Stx1-converting recombinant phage HUN/2013	61137	49.710	Escherichia	Group I	Traversvirus	Traversvirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7 Sakai	High-quality	High-quality	93.220	AAI-based (high-confidence)	Traversvirus	Traversvirus II	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_24;integrase orf_25;cro orf_50;cro orf_51;antirepressor orf_62;antirepressor orf_76
KJ920400	Bacillus phage Waukesha92	45648	35.452	Bacillus	Group I	Waukeshavirus	Waukeshavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis subsp. Kurstaki	High-quality	High-quality	99.300	AAI-based (high-confidence)	Waukeshavirus	Waukeshavirus waukesha92	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_31;integrase orf_50
KJ936628	Vibrio phage VPp1	50431	41.346	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus VP 17802	Medium-quality	Genome-fragment	58.290	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic