INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KJ716335 | Dickeya phage RC-2014 | 155346 | 49.649 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya sp. | High-quality | High-quality | 98.380 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus RC2014 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KJ722067 | Propionibacterium phage Pacnes 2012-15 | 29741 | 54.423 | Propionibacterium | Group I | Pahexavirus | Pahexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium acnes | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pahexavirus | Pahexavirus pacnes201215 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ725374 | Mycobacterium phage Guo1 | 40086 | 66.844 | Mycobacterium | Group I | Liefievirus | Liefievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis | High-quality | High-quality | 93.160 | AAI-based (high-confidence) | Liefievirus | Liefievirus liefie | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ743987 | Sinorhizobium phage phiLM21 | 50827 | 60.661 | Sinorhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium sp. LM21 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_2 |
| KJ746502 | Rhizobium phage vB_RleM_PPF1 | 54506 | 61.900 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium leguminosarum strain F1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_41 |
| KJ748011 | Escherichia phage PE3-1 | 39093 | 49.927 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O153 | High-quality | High-quality | 98.280 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus PE31 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KJ749827 | Escherichia phage ECBP5 | 45403 | 45.891 | Escherichia | Group I | Gajwadongvirus | Gajwadongvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Gajwadongvirus | Gajwadongvirus ECBP5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ801817 | Enterococcus phage ECP3 | 145519 | 35.908 | Enterococcus | Group I | Kochikohdavirus | Kochikohdavirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kochikohdavirus | Kochikohdavirus ECP3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ802832 | Salmonella phage 9NA | 52869 | 42.908 | Salmonella | Group I | Nonanavirus | Nonanavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Typhiurium strain LT2 | High-quality | High-quality | 93.500 | AAI-based (high-confidence) | Nonanavirus | Nonanavirus nv9NA | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KJ803031 | Dinoroseobacter phage vBDshPR2C | 74806 | 49.166 | Dinoroseobacter | Group I | Baltimorevirus | Baltimorevirus | Rhodovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dinoroseobacter shibae DFL12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Baltimorevirus | Baltimorevirus DFL12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |